This is a pipeline for exploring viruses (ssDNA, dsDNA phage, and giant DNA viruses) and viral diversity in metagenomes.

Python Programming for Biologists

A Gentle Introduction to R, RStudio, and visualization

Training materials for Prism 8

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce modern data science practice using the R language.

RML Introduction to Structural Biology

Example workflow using LOCUS to identify viral sequences in bulk metagenomic data

The goal of this repository is to provide a series of course materials that is used for online seminars to introduce R programming.

A general introduction for biologists on scRNAseq, with a focus on the difference from bulk RNA-seq

RNAseq workshop courses and materials

An introduction to NGS sequencing, including an overview of methods, quality control checks, preprocessing, and basic manipulation and mapping of the data.

Introductory notes on using Geneious (Biomatters) at NIAID

Training Materials for Survey Data Analysis in R (Exposure from NHANES)

Training materials for Statistical Testing

Introductory practical training on preprocessing and QC of RNA Seq data

Training materials for UNIX course

Intro to Deep Learning Course Materials

Introduction to Human Next Generation Sequencing Projects and GWAS analysis offered to ACE Mali students. GWAS demo utilizing PLinK, a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses.

Teaching Materials for 2024-2025 Spatial Transcriptomics workshops, prepared by Margaret Ho (NIAID BCBB Science Support)