Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites

nice algorithm to initialize starting trees in BEAST2

Analyse citations from locally installed BEAST 2 packages

Summarise BEAST 2 packages

Example for BEAST v2.5 paper

Modules for BEAST 2

Update your BEAST2 XML to account for constant sites

Python code to convert STR length data to number of repetitions

Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)

PhD thesis

A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.

Basic statistics of BEAST2 development

Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.

Dynamic BEAST2 XML files

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A set of functions to plot BEAST outputs

Bayesian phylodynamic methods in BEAST2

Models for dealing with morphological data

R package that estimates the error BEAST2 makes from a given phylogeny