Elastic Network Model computation featuring GPU acceleration and parallel processing

Setup and run aMDeNM simulations with Python

Setup, run and analyse Adaptive MDeNM simulations on CHARMM

Full ENM framework with improved tuning, model performance assessment and selection. Based on MaxEnt, but transferrable to any presence-only ML algorithm.

Ecological niche modeling and conservation assessment of hickory trees (Carya Nutt.)

Integrative species delimitation in the Myrcia neoobscura complex

enm-cli is a unofficial port of some Ericsson ENM web-applications to cli interface written in javascript for nodejs

This project is a digital version of the so called Relationship Anarchy Smorgasbord. We believe this is a powerful tool and can benefit many more people if there's an easier way to use it.

Models for Middle English provided by CLTK

Faster, better, smarter ecological niche modeling and species distribution modeling

Modeling vulnerability of ruffed lemurs to climate change and deforestation

Script wfbatch is a wfcli (WinFIOL command line tool) wrapper builtin Ericsson ENM designed to send wfcli commands to several nodes in parallell. Closest to mobatch behavior as possible. Written in bash.

Command Line Interface to API Topology Browser Ericsson ENM

Processed data and scripts for a research article "Optimising Elastic Network Models for Protein Dynamics and Allostery: Spatial and Modal Cut-offs and Backbone Stiffness".

This is a workflow for ecological niche modeling and species distribution modeling for the Marmosini (Didelphimorphia: Didelphidae) of Colombia. It is based on R programming language.

Scripts for handling of various tasks with Ericsson Network Manager ENM

Data and code for Computational Analysis of Dynamic Allostery and Control in the SARS-CoV-2 Main Protease

Thesis for GIST master’s at USC-SSCI. Study compares tuned versus default MaxEnt models at two different covariate resolutions (30m and 800m). Various R packages were used in creating and evaluating the models. ArcGIS Pro used for data preparation and presentation.

Comparing independent, partial pooling, and phylogeny-informed ecological niche models

Scripts for species distribution modeling in R using MaxEnt