tools for genetic genealogy and the analysis of consumer DNA test results

HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes

This python script detects known traits in raw human genetic data.

This repository hosts the tracker for issues pertaining to GO annotations.

Extract the Ensembl genes catalog to simple tables

A Silver Standard Corpus of Human Phenotype-Gene Relations

Welcome to Prometheus, the revolutionary AI model that allows you to generate DNA sequences for any creature you can imagine. Whether it’s a pink panda, an elephant-sized turtle, or a completely new lifeform from your wildest dreams, Prometheus decodes the mystery of biology and synthesizes genetic blueprints with precision.

MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.

deepARG using deep semantic representation

MAGE :: Meta-Analysis of Gene Expression

Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes

AMPcombi parses and filters results from AMP prediction tools

IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results

A powerful abstraction of gene databases

CLI for converting CSV/TSV files to Excel spreadsheets without mangling gene names

A small library to work with ensembl and other annotations in python

kath is a user-friendly GUI tool designed for the in-depth analysis of gene variation data sourced from LOVD, GNOMAD, and CLINVAR databases.

Itraa: A gene-set enrichment pipeline for selection and gene-based analyses.

A package for biomarker selection based on multiset multicover and the cross-entropy-method.

Extract alleles from genome assemblies