🐶 hlabud: HLA genotype analysis in R

Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.

R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions.

An R library for HLA informatics

Modernized HLALOH, a HLA loss of heterozygosity detection algorithm

HLAXPress performs estimation of allele-specific expression levels for HLA genes using UMIs.

Shiny App to visualize HLA-based PCA

R script and resources for plotting SNP density from tabular input.