An analysis and visualization platform for 'omics data
Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
Federating genomes with love (and synteny derived from functional annotations)
Optimal sequence-to-graph alignment with recombinations
generating hardware accelerators for pangenomic graph queries
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
Pangenome Mutation-Annotated Networks
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
An accurate aligner of long reads to a variation graph, based on co-linear chaining
Construct and Analyze the North American Vitis pangenome
AMR/VF LGT focused bacterial genomics analysis workflow
Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México
A pipeline for construction and graphical visualization of annotated pangenome networks.
Pangenome Analysis in Prokaryotes Lesson
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.
Fast and Optimal Affine-Gap Sequence-to-Graph Alignment
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