C library for SAXS calculation using Fast Manifold Fourier Transform with MPI support

Nomenclature and definitions of protein complexes in BEL

A tool to visualize 1-D versus 3-D pair-wise residue distances of a protein structure.

Identifying transmembrane helices in tertiary structures

mmCIF schema describing the tunnel entries from MOLEonline

Carbonic Anhydrase motif classification in Python

A Bio2BEL package for converting InterPro to BEL

The aim of this project is to correctly predict the contact types in given protein structures, which are to be presented in PDB file format. MODELS: Naive Bayes Classifier, Multinomial Logistic Regression, Linear Discriminant analysis.

A basic CRUD for Proteins with string query functionality.

An easy fragment of code to read in fasta format files

A Bio2BEL package for converting ExPASy to BEL

A command line tool for identifying conserved lysine modification sites

Development branch of sacdallago/biotrainer

In silico design for Project 'Catcheater'. A modular, tag-less quality-control (QC) system for E. coli to eliminate 'cheater' cells during protein production.

For viewing, analyzing, and generating figures of protein sequence alignments.

A protein-glycan benchmark, ready for use with HADDOCK

This repository organizes all assets for a Drug Target Binding study: preprocessing scripts, analysis notebooks, datasets, and relevant literature

This project represents my Master Studies final project. The main idea is to create metapredictor which will use the method of consensus to determine the structure of the proteins. In the paper, written in Serbian, you can find an explanation for all the methods and biology terms used during the development. The software, itself, will be fully i…