Image-processing software for cryo-electron microscopy

Manipulate and mine Relion .star files

example set up for Relion on AWS ParallelCluster for CryoEM

Software to integrate Relion GUI with Amazon Web Services, accompanied by easy command line tools. Learn more at cryoem-tools.cloud

Implementation of a Bayesian approach to cryo-EM structure determination

Step-by-step instructions for installing an Ubuntu workstation with standard cryo-em software

Python scripts for Relion external job type

RelionReport is a tool which generates a report and animation from a given relion 3DClass, Refine3D or InitialModel job. RelionReport aims to give more meaningful output from relion jobs to aid in making processing decisions and presenting processing data.

helper scripts for Electron microscopy data processing

Software to divide data collected using Leginon into optics groups according to image shift

A tool reading IMOD points, obtaining particles' info and generating .star file for RELION

A tool converting DYNAMO table files(.tbl) to RELION star files(.star)

Subtomogram Averaging using Dynamo, imod, Relion and MatLab

File converter for RELION/CryoSPARC files per job type.

Sbatch scripts for submitting cryo-EM jobs on Stanford's Sherlock compute cluster.

A suite of Odd-Job scripts for cryo-em data processing.

Split relion star files by tomogram or Warp directory.

Some scripts to facilitate subtomogram-averaging workflows.

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