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  • Children's Hospital of Philadelphia
  • Philadelphia

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Showing results
R 1 Updated Dec 28, 2025
Python 5 3 Updated Jun 21, 2024

Find the biology from your DNA methylation data

C 5 1 Updated Jan 24, 2026

a wee tool for random access into BGZF files.

C 86 12 Updated May 10, 2018

sesamize a minfi ratioSet or RGSet

R 1 Updated May 4, 2023

PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

Python 368 35 Updated Feb 11, 2026

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

C++ 113 18 Updated Mar 8, 2024

The Fundamental Clustering Problems Suite (FCPS) summaries 54 state-of-the-art clustering algorithms, common cluster challenges and estimations of the number of clusters as well as the testing for …

HTML 23 2 Updated May 29, 2023

A clustering approach for every projection method based on the generalized U*-matrix visualization of a topographic map

R 8 4 Updated May 31, 2022

❗ This is a read-only mirror of the CRAN R package repository. fpc — Flexible Procedures for Clustering. Homepage: https://www.unibo.it/sitoweb/christian.hennig/en/

R 11 1 Updated Jan 14, 2026

Consistent ESS-like eval interface for various REPLs

Emacs Lisp 178 28 Updated Aug 5, 2023

Send and eval org-mode babel code blocks in various REPLs (therefore it's async)

Emacs Lisp 60 8 Updated Oct 29, 2021

MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for me…

C 13 1 Updated Jul 2, 2022

The art of using t-SNE for single-cell transcriptomics

Jupyter Notebook 131 35 Updated Nov 29, 2024

Plotting package for bisulfite sequencing and methylation arrays

R 7 6 Updated Sep 18, 2023

BISulfite-seq CUI Toolkit

C 26 8 Updated Feb 4, 2026

The silver searcher with helm interface

Emacs Lisp 501 77 Updated Nov 20, 2025

Emacs extension to increase selected region by semantic units.

Emacs Lisp 1,455 134 Updated Dec 17, 2024

Pipelines to create and analyze ENCODE candidate cis-Regulatory Elements

Jupyter Notebook 28 9 Updated Jan 5, 2026

Simple R version management, based on rbenv

Shell 117 13 Updated May 8, 2022

generic colouriser

Python 2,126 161 Updated Aug 18, 2024

Oxford Nanopore Technologies fast5 API software

Python 154 30 Updated Feb 27, 2024

lab wiki

Shell 3 3 Updated Nov 17, 2025

simplistic package for HDF5-related testing in R/Bioconductor

R 1 Updated Jul 9, 2020

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

Jupyter Notebook 10,046 1,576 Updated Sep 11, 2025

Emacs minor mode for making Anki cards with Org

Emacs Lisp 742 86 Updated Oct 23, 2022

Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature.org/).

Python 288 98 Updated Feb 10, 2026

Row-oriented workflows in R with the tidyverse

R 423 41 Updated Dec 29, 2018

LINE: Large-scale information network embedding

C++ 1,053 411 Updated Jul 16, 2024

Application for inferring subclonal composition and evolution from whole-genome sequencing data.

Python 114 55 Updated Oct 12, 2022
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