Lists (1)
Stars
Computing Protein Electric Field Topology in python, built for high-throughput accelerated calculations
Public RFDiffusionAA repo
The Family of Diffusion Protein Language Models (DPLM)
Open Babel is a chemical toolbox designed to speak the many languages of chemical data.
Open source code for AlphaFold 2.
🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
Official repository for the ProteinGym benchmarks
Multiple Protein Structure Alignment at Scale with FoldMason
Foldseek enables fast and sensitive comparisons of large structure sets.
Public/backup repository of the GROMACS molecular simulation toolkit. Please do not mine the metadata blindly; we use https://gitlab.com/gromacs/gromacs for code review and issue tracking.
Making Protein Design accessible to all via Google Colab!
Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
This package contains deep learning models and related scripts for RoseTTAFold
🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
Compressing protein structures effectively with torsion angles
In-house inpainting pipeline (Rfdiffusion>ProteinMPNN>AF2)
Making Protein folding accessible to all!
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2