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Showing results

Automatically read tree structure from image format

Python 3 1 Updated Jan 5, 2018

Source code for TreeBASE web application and database

Java 10 3 Updated Aug 24, 2022

Automatically exported from code.google.com/p/treeripper

C++ 1 Updated Mar 17, 2015

Official git repository for Biopython (originally converted from CVS)

Python 4,781 1,841 Updated Oct 24, 2025

Image captioning with VisionEncoderDecoderModel from huggingface

Python 6 Updated Jul 5, 2023

Image captioning with ViT and GPT-2 from learning to demonstration on Modal

Python 5 1 Updated May 10, 2023

Mummer alignment tool

C++ 529 111 Updated Feb 4, 2025

SPAdes Genome Assembler

C++ 873 153 Updated Oct 13, 2025

Open Source Computer Vision Library

C++ 84,615 56,322 Updated Oct 24, 2025

DELLY2: Structural variant discovery by integrated paired-end and split-read analysis

C++ 489 139 Updated Aug 14, 2025

Repository for my Bachelors thesis on the extraction of phylogenies from images using AI namely the OpenAI API.

Python 1 Updated Sep 6, 2025

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

Python 854 222 Updated Sep 11, 2025

The next version of bwa-mem

C++ 789 114 Updated Oct 15, 2025

A simple tool for visually comparing two PDF files

C++ 4,071 241 Updated Nov 26, 2024

Open Source Continuous File Synchronization

Go 77,072 4,815 Updated Oct 25, 2025

Fast genome and metagenome distance estimation using MinHash

C++ 422 94 Updated Sep 19, 2025

RAxML Next Generation: faster, easier-to-use and more flexible

C++ 440 63 Updated Oct 23, 2025

Align multiple amino acid or nucleotide sequences.

C 65 9 Updated Sep 17, 2020

Obsidian plugin that seamlessly integrates Xournal++ for handwritten notes and annotations.

TypeScript 47 9 Updated Jun 21, 2025

Xournal++ is a handwriting notetaking software with PDF annotation support. Written in C++ with GTK3, supporting Linux (e.g. Ubuntu, Debian, Arch, SUSE), macOS and Windows 10. Supports pen input fr…

C++ 13,642 951 Updated Oct 25, 2025

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

Python 222 59 Updated Oct 19, 2025

Community plugins list, theme list, and releases of Obsidian.

13,246 4,169 Updated Oct 25, 2025

This repository includes the tool for the prediction, comparison and visualization of TSS predicted using RNAseq. The results are then compared to provide an overview and also single-detailed visua…

Jupyter Notebook 3 Updated Aug 31, 2024

Anki is a smart spaced repetition flashcard program

Rust 24,330 2,567 Updated Oct 21, 2025