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imagej_macros_and_scripts
imagej_macros_and_scripts PublicImageJ macros and scripts written at the imaging facility MRI
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napari-bigfish
napari-bigfish PublicA napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images
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mri-workshop-machine-learning
mri-workshop-machine-learning PublicThe MRI machine learning workshop
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Repositories
- bacteria-density Public
MontpellierRessourcesImagerie/bacteria-density’s past year of commit activity - napari-tree-rings Public
A napari plugin to delineate bark, pith, and xylem annual rings and to measure their property parameters on circular sections of tree trunks.
MontpellierRessourcesImagerie/napari-tree-rings’s past year of commit activity - napari-membrane-intensity Public
Allows to segment cells, track them over time, and measure the intensity in their membrane. For yeasts specifically, also allows to merge each bud with its mother.
MontpellierRessourcesImagerie/napari-membrane-intensity’s past year of commit activity - napari-unet Public
A Napari plugin allowing to make patches from images, train a UNet, run the inference on images and compute metrics. Specially made for filaments.
MontpellierRessourcesImagerie/napari-unet’s past year of commit activity - Workshop-Filament-Analysis Public
A workshop about the specifics of the segmentation and analysis of filaments.
MontpellierRessourcesImagerie/Workshop-Filament-Analysis’s past year of commit activity
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