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PopScalescRNAseq Public
Just me comparing some public foundation models with regular data in NYU UV
Python UpdatedNov 7, 2025 -
PaperLLM Public
Simple project that summarizes PDFs for LLMs.
Python GNU General Public License v3.0 UpdatedOct 30, 2025 -
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Biomni Public
Forked from snap-stanford/BiomniBiomni: a general-purpose biomedical AI agent
Python Apache License 2.0 UpdatedAug 22, 2025 -
DSPyEDAM Public
Using GPT4o to match Bioconductor Vignettes to EDAM annotations
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sequoia-pub Public
Forked from gevaertlab/sequoia-pubSEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention
Python MIT License UpdatedJun 4, 2025 -
AIO2025_AYN Public
Damn, it do be a project.
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AutoGPT Public
Forked from Significant-Gravitas/AutoGPTAutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.
Python Other UpdatedMar 14, 2025 -
DeepSeekClinVar Public
Local, structured knowledge extraction vs biological DBs
GNU General Public License v3.0 UpdatedFeb 9, 2025 -
TranscribeLLM Public
The previous paper LLM but now you can also add a talk (currently youtube video, Zoom recording afterwards with API access)
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scvi-tools-fractionalgpu Public
Forked from scverse/scvi-toolsDeep probabilistic analysis of single-cell and spatial omics data
Python BSD 3-Clause "New" or "Revised" License UpdatedOct 8, 2024 -
celery Public
Forked from render-examples/celeryCelery Quick Start on Render
HTML UpdatedJun 2, 2024 -
CellChat_ShinyApps Public
Forked from jinworks/CellChatR toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
R GNU General Public License v3.0 UpdatedMay 3, 2024 -
DescTools Public
Forked from AndriSignorell/DescToolsTools for Descriptive Statistics and Exploratory Data Analysis
R UpdatedDec 15, 2023 -
rstudio Public
Forked from rstudio/rstudioRStudio is an integrated development environment (IDE) for R
Java Other UpdatedDec 20, 2021 -
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biotools Public
Forked from jdidion/biotoolsA list of useful bioinformatics resources
UpdatedSep 23, 2021 -
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pokemon-showdown Public
Forked from smogon/pokemon-showdownPokémon battle simulator.
TypeScript MIT License UpdatedDec 11, 2020 -
NinjaPCR Public
Forked from hisashin/NinjaPCROpen Thermocycler Implementation
SMT GNU General Public License v3.0 UpdatedOct 29, 2020 -
arnie Public
Forked from WaymentSteeleLab/arniePython utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
Jupyter Notebook MIT License UpdatedAug 20, 2020 -
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harmony Public
Forked from immunogenomics/harmonyFast, sensitive and accurate integration of single-cell data with Harmony
R Other UpdatedJun 4, 2020 -
scrinvex Public
Forked from getzlab/scrinvexSingle Cell RNA Intron-Exon counting
C++ BSD 3-Clause "New" or "Revised" License UpdatedMay 7, 2020 -
Well, this is still in it's infancy.
Jupyter Notebook UpdatedApr 14, 2020 -
dalamagas_stuff Public
Solutions for the exercises in the Algorithms in Bioinformatics course of the Data Science and Information Technology M.Sc. (Biomedical Data Science Specialization)
UpdatedMar 19, 2020 -
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