Stars
ruptures: change point detection in Python
Pretraining infrastructure for multi-hybrid AI model architectures
Inference and numerics for multi-hybrid AI model architectures
HemTools: a collection of NGS pipelines and bioinformatic analyses
Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…
Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal
✏️ A versatile DNA sequence optimizer
🎯 ChIP peak Annotation, Comparison and Visualization
Implementation of Alphafold 3 from Google Deepmind in Pytorch
This API provides programmatic access to the AlphaGenome model developed by Google DeepMind.
BioNeMo Framework: For building and adapting AI models in drug discovery at scale
GENERator: A Long-Context Generative Genomic Foundation Model
a framework for training sequence-level deep learning networks
A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
QBioCode is a suite of computational resources to support quantum applications in healthcare and life science data.
A PyTorch-based framework for Quantum Classical Simulation, Quantum Machine Learning, Quantum Neural Networks, Parameterized Quantum Circuits with support for easy deployments on real quantum compu…
Qiskit is an open-source SDK for working with quantum computers at the level of extended quantum circuits, operators, and primitives.
DeepSpeed is a deep learning optimization library that makes distributed training and inference easy, efficient, and effective.
TACO: TFBS-Aware Cis-Regulatory Element Optimization
python module to plot beautiful and highly customizable genome browser tracks
Visualizer for neural network, deep learning and machine learning models
Prediction of Active Enhancers and Promoters in a Cell type specific manner using shape matching of histone and/or DNase-I hypersensitivity profiles
DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome