Stars
A collaborative website to provide exact salaries of French postdocs from official sources.
Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.
Commandline image generator for Pretext contact maps.
A versatile pairwise aligner for genomic and spliced nucleotide sequences
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
Quickly search, compare, and analyze genomic and metagenomic data sets.
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
Parallelised and automated construction of metagenomic classifier databases of different tools
Repository to host tool-specific module files for the Nextflow DSL2 community!
A flexible pipeline for complete analysis of bacterial genomes
Python package with helper tools for the nf-core community.
nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.
Phylogenetic orthology inference for comparative genomics
Earl Grey: A fully automated TE curation and annotation pipeline
HELIANO is a software for detection and classification of Helitron-like elements.
Aggregate results from bioinformatics analyses across many samples into a single report.
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
This pipeline is dedicated to identifying the most stable genes within a single or multiple expression dataset(s). This is particularly useful for identifying the most suitable RT-qPCR reference ge…