Rapid comparison and dereplication of genomes

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Prodigal Gene Prediction Software

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

Slides for Algorithms for DNA Sequencing Coursera class

diploid SNV caller for error-prone reads

A local-haplotagging-based small and structural variant caller

A versatile pairwise aligner for genomic and spliced nucleotide sequences