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Angelos-GK/README.md


Welcome to my Github profile, I'm Angelos Galanopoulos!

PhD student in Single Cell Genomics at Charité – Universitätsmedizin Berlin.

LinkedIn e-mail


bio logo Programming

bio logo Toolbox bio logo OS bio logo IDEs
R Python Bash SQL Github Linux Windows VSCode RStudio Jupyter

bio logo Bioinformatics tools

samtools FastQC MultiQC trimmomatic cutadapt hisat2 bwa bamtools vcftools varscan featureCounts GATK HOMER Picard Kraken2 krakentools krona Snakemake Bioconductor Biopython IGV Mutect2 strelka2

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  1. Ensembl-IDs-to-gene-symbols Ensembl-IDs-to-gene-symbols Public

    Convert Ensembl IDs to gene symbols

    R

  2. R-methylation-workflow R-methylation-workflow Public

    A pipeline to analyze methylation array data

    R

  3. RNAseq-data-manipulation RNAseq-data-manipulation Public

    Scripts on how to manipulate and visualize RNAseq data

    R

  4. single-cell-RNAseq-data-analysis single-cell-RNAseq-data-analysis Public

    A collection of R scripts on handling scRNAseq data

    R 1 1

  5. Variant-calling-workflow Variant-calling-workflow Public

    A variant calling workflow, starting from raw reads to variant identification

    Shell

  6. machine-learning-cancer-prediction machine-learning-cancer-prediction Public

    A script to predict cancer type based on gene expression values using a machine learning model

    Jupyter Notebook