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test: ♻️ Further adding of tmp_path #523

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Dec 18, 2022
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test: ♻️ Further adding of tmp_path #523

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85 changes: 44 additions & 41 deletions spectrafit/test/test_input.py
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Original file line number Diff line number Diff line change
Expand Up @@ -54,7 +54,9 @@ def test_extended_verbose(self, monkeypatch: Any, script_runner: Any) -> None:
class TestFileFormat:
"""Testing the file formats."""

def test_json_input(self, monkeypatch: Any, script_runner: Any) -> None:
def test_json_input(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing json support."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -63,16 +65,16 @@ def test_json_input(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_3.json",
"-o",
"spectrafit/test/export/result_json",
f"{tmp_path}/result_json",
)
assert ret.success
assert ret.stderr == ""
assert (
len(list(Path(".").glob("spectrafit/test/export/result_json*.json"))) == 1
)
assert len(list(Path(".").glob("spectrafit/test/export/result_json*.csv"))) == 3
assert len(list(Path(tmp_path).glob("result_json*.json"))) == 1
assert len(list(Path(tmp_path).glob("result_json*.csv"))) == 3

def test_yml_input(self, monkeypatch: Any, script_runner: Any) -> None:
def test_yml_input(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing yml support."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -81,14 +83,16 @@ def test_yml_input(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_3.yml",
"-o",
"spectrafit/test/export/result_yml",
f"{tmp_path}/result_yml",
)
assert ret.success
assert ret.stderr == ""
assert len(list(Path(".").glob("spectrafit/test/export/result_yml*.json"))) == 1
assert len(list(Path(".").glob("spectrafit/test/export/result_yml*.csv"))) == 3
assert len(list(Path(tmp_path).glob("result_yml*.json"))) == 1
assert len(list(Path(tmp_path).glob("result_yml*.csv"))) == 3

def test_yaml_input(self, monkeypatch: Any, script_runner: Any) -> None:
def test_yaml_input(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing yaml support."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -97,16 +101,16 @@ def test_yaml_input(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_3.yaml",
"-o",
"spectrafit/test/export/result_yaml",
f"{tmp_path}/result_yaml",
)
assert ret.success
assert ret.stderr == ""
assert (
len(list(Path(".").glob("spectrafit/test/export/result_yaml*.json"))) == 1
)
assert len(list(Path(".").glob("spectrafit/test/export/result_yaml*.csv"))) == 3
assert len(list(Path(tmp_path).glob("result_yaml*.json"))) == 1
assert len(list(Path(tmp_path).glob("result_yaml*.csv"))) == 3

def test_toml_input(self, monkeypatch: Any, script_runner: Any) -> None:
def test_toml_input(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing toml support."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -115,14 +119,12 @@ def test_toml_input(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_3.toml",
"-o",
"spectrafit/test/export/result_toml",
f"{tmp_path}/result_toml",
)
assert ret.success
assert ret.stderr == ""
assert (
len(list(Path(".").glob("spectrafit/test/export/result_toml*.json"))) == 1
)
assert len(list(Path(".").glob("spectrafit/test/export/result_toml*.csv"))) == 3
assert len(list(Path(tmp_path).glob("result_toml*.json"))) == 1
assert len(list(Path(tmp_path).glob("result_toml*.csv"))) == 3


class TestFileFormatOutput:
Expand Down Expand Up @@ -158,7 +160,9 @@ def test_default_options(self, monkeypatch: Any, script_runner: Any) -> None:
assert ret.success
assert ret.stderr == ""

def test_energyrange_e0(self, monkeypatch: Any, script_runner: Any) -> None:
def test_energyrange_e0(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing lower energy range cut."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -167,17 +171,19 @@ def test_energyrange_e0(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_5.json",
"-o",
"spectrafit/test/export/e0_result",
f"{tmp_path}/e0_result",
"-e0",
"0.0",
)
assert ret.success
assert ret.stderr == ""

df_test = pd.read_csv(Path("./spectrafit/test/export/e0_result_fit.csv"))
df_test = pd.read_csv(tmp_path / "e0_result_fit.csv")
assert_almost_equal(df_test["energy"].min(), 0.0, decimal=0)

def test_energyrange_e1(self, monkeypatch: Any, script_runner: Any) -> None:
def test_energyrange_e1(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing upper energy range cut."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -186,18 +192,20 @@ def test_energyrange_e1(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_5.json",
"-o",
"spectrafit/test/export/e1_result",
f"{tmp_path}/e1_result",
"--oversampling",
"-e1",
"5.0",
)
assert ret.success
assert ret.stderr == ""

df_test = pd.read_csv(Path("./spectrafit/test/export/e1_result_fit.csv"))
df_test = pd.read_csv(tmp_path / "e1_result_fit.csv")
assert_almost_equal(df_test["energy"].max(), 5.0, decimal=0)

def test_energyrange_e0e1(self, monkeypatch: Any, script_runner: Any) -> None:
def test_energyrange_e0e1(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing lower and upper energy range cut."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -206,7 +214,7 @@ def test_energyrange_e0e1(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_5.json",
"-o",
"spectrafit/test/export/e0e1_result",
f"{tmp_path}/e0e1_result",
"--oversampling",
"-e0",
"0",
Expand All @@ -216,7 +224,7 @@ def test_energyrange_e0e1(self, monkeypatch: Any, script_runner: Any) -> None:
assert ret.success
assert ret.stderr == ""

df_test = pd.read_csv(Path("./spectrafit/test/export/e0e1_result_fit.csv"))
df_test = pd.read_csv(tmp_path / "e0e1_result_fit.csv")
assert_almost_equal(df_test["energy"].max(), 5.0, decimal=0)
assert_almost_equal(df_test["energy"].min(), 0.0, decimal=0)

Expand Down Expand Up @@ -284,7 +292,9 @@ def test_no_input(self, monkeypatch: Any, script_runner: Any) -> None:
)
assert not ret.success

def test_conf_interval(self, monkeypatch: Any, script_runner: Any) -> None:
def test_conf_interval(
self, monkeypatch: Any, script_runner: Any, tmp_path: Path
) -> None:
"""Testing upper energy range cut."""
monkeypatch.setattr("builtins.input", lambda _: "n")
ret = script_runner.run(
Expand All @@ -293,18 +303,11 @@ def test_conf_interval(self, monkeypatch: Any, script_runner: Any) -> None:
"-i",
"spectrafit/test/scripts/test_input_6.json",
"-o",
"spectrafit/test/export/conf_interval_result",
f"{tmp_path}/conf_interval_result",
)
assert ret.success
assert ret.stderr == ""
assert (
len(
list(
Path(".").glob("spectrafit/test/export/conf_interval_result*.json")
)
)
== 1
)
assert len(list(Path(tmp_path).glob("conf_interval_result*.json"))) == 1

def test_get_no_errors(self, monkeypatch: Any, script_runner: Any) -> None:
"""Testing for no errorbars for spectrafit."""
Expand Down