Set of boilerplate scripts describing the normalized script pattern that GitHub uses in its projects.

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

Construct and analyse dynamical models of biological interaction networks

A Grammar of Graphics for Python

The goal of this package is to perform uncertainty quantification across the entire input space of PhysiCell models (including parameters, initial conditions, and rules) using either a single deskt…

Fasten is an open-source, self-hosted, personal/family electronic medical record aggregator, designed to integrate with 100,000's of insurances/hospitals/clinics

Awesome Privacy - A curated list of services and alternatives that respect your privacy because PRIVACY MATTERS.

SyncToy, but brought up-to-date with a Fluent design and a nod to the past.

This page hosts NeKo, a python package that allow the user to automatically build gene regulatory networks from any databases.

Gene regulatory network inference and analysis based on scRNA-sequencing data

GitHub Action for advanced repository traffic analysis and reporting

PerMedCoE community benchmarking code for the Chaste project

Repository for all parallel alternatives of BioFVM

Repository for all parallel alternatives of PhysiCell

Description of the efforts towards having a comprehensive observatory of tools and their benchmarks

PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To contribute, fork and make PRs to the deve…

🎓 Path to a free self-taught education in Computer Science!

A collection of 230+ Boolean networks from various sources useful for benchmarking or testing.

resources for faculty

Workflow Execution Service Backend

PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks

Scripts needed to perform drug simulations with PhysiBoSS-Drugs (https://github.com/anmeert/PhysiBoSSv2) and to perform the data analysis of my master thesis "PhysiBoSS-Drugs: A customizable drug s…

This repo is dedicated to for PhysiCell-SBML integration. (Be aware weird values around here!)

BioDynaMo is a high-performance and modular, agent-based simulation platform.