Awesome Domain Generalization for Computational Pathology

Evaluation framework for oncology foundation models (FMs)

Pathology data extraction and curation

Ressources of histopathology datasets

Python port of a spacing filling curve drawing function written in javascript

Ahcore is the AI for Oncology core computational pathology toolkit

cuCIM - RAPIDS GPU-accelerated image processing library

This is the official code of the paper "Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and Co-Training"

Interoperable web-based DICOM slide microscopy viewer and annotation tool

Interpretable Gland-Graph Networks

Quality control of whole-slide images through multi-class semantic segmentation of artifacts

napari: a fast, interactive, multi-dimensional image viewer for python

Encoder-Decoder Cell and Nuclei segmentation models

BCI: Breast Cancer Immunohistochemical Image Generation through Pyramid Pix2pix

Pipeline for computational pathology

Intelligent data partitioning using quality control metrics

An open-source digital pathology based rapid image annotation tool

A tool for rapidly labeling objects using deep learning feature embedding

HistoQC is an open-source quality control tool for digital pathology slides

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute

Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding

Research project for the 2021 edition of "Advanced Topics in Computational Semantics" at the University of Amsterdam. Topic is "Mitigating Label Mismatches across Emotion Detection Datasets using M…

Identifying through Flows for Recovering Latent Representations, accepted to ICLR2020