Segment Anything in Medical Images

An end-to-end hybrid MR simulator/console

Pulseq in Python

Deep learning framework for MRI reconstruction

In this work, four popular deep convolutional neural networks (U-NET, DeepLab, FCN and SegNet) for image segmentation are constructed and compared. This comparison reveals the tradeoff between achi…

Segmentation of kidneys on MRI in Autosomal Dominant Polycystic Kidney

Deep learning based skull stripping and FLAIR abnormality segmentation in brain MRI using U-Net

Deep Learning tools for brain medical images

Tensorflow implementation of our paper: Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning

CNN for Synovitis Segmentation in MRI

Alzheimer's Disease Prediction by using ResNet, AlexNet

A deep learning based approach for brain tumor MRI segmentation.

Program to calculate the ideal capacitor values for birdcage coil designs

This Repository contains different methods to reduce noise level in the concentration curve generated during DCE MRI.

An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

Tools for MRI mouse brain morphometry

3D residual neural network that predicts age based on brain MRI images (implemented using TensorFlow 2).

Code for NeuroImage: Clinical paper "Automatic post-stroke lesion segmentation on MR images using 3D residual convolutional neural network."

The code for paper 'DeepcomplexMRI: Exploiting deep residual network for fast parallel MR imaging with complex convolution'

3D MRI data exploration and segmentation tool.

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study

Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-s…

Fully supervised, healthy/malignant prostate detection in multi-parametric MRI (T2W, DWI, ADC), using a modified 2D RetinaNet model for medical object detection, built upon a shallow SEResNet backb…

Building an ACL tear detector to spot knee injuries from MRIs with PyTorch (MRNet)

A NIfTI (nii.gz) 3D Visualizer using VTK and Qt5

Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)

REACT: Receptor-Enriched Analysis of functional Connectivity by Targets

Multi Atlas Segmentation and Morphometric analysis toolkit (MASMAT) for mouse brain MRI