Starred repositories
Manage and publish your notes to Quartz, the fast, batteries-included static-site generator.
🌱 a fast, batteries-included static-site generator that transforms Markdown content into fully functional websites
A Python package for rendering protein structures in 3D using Ursina, featured on Ursina's sample site
🪼 a python library for doing approximate and phonetic matching of strings.
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
PYEAST, a python program to help with cloning in Saccharomyces cerevisiae
interactive & hardware agnostic SDK for lab automation
Python module (C extension and plain python) implementing Aho-Corasick algorithm
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
Efficiently read and write sequencing data from Python
A fast, simple and lightweight Bloom filter library for Python, implemented in Rust.
Webserver and command line tool for annotating engineered plasmids
Lightweight genome browser for microbial genomes
Fast cloning primer designing project script and files
Personal portfolio website built with Astro featuring responsive design, content collections for projects and links, and modern CSS. Optional Integration with Obsidian for content. Auto-deployed to…
Jump to a date via a convenient popup form. This plugin is a part of the Obsidian42 family of Obsidian plugins.
PDF signing software written in Java. It supports visible signatures, timestamping, certificate verification and many other cool features
Community plugins list, theme list, and releases of Obsidian.
chrome extension for viewing Jupyter Notebooks in the browser without Jupyter Server
A Python 3 package to estimate the thermodynamic properties and HKF parameters of aqueous organic molecules using second order group additivity methods.
Electronic Lab Notebook based on the Obsidian markdown editor.
teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python plat…
Up to 100x faster strings for C, C++, CUDA, Python, Rust, Swift, JS, & Go, leveraging NEON, AVX2, AVX-512, SVE, GPGPU, & SWAR to accelerate search, hashing, sorting, edit distances, sketches, and m…
A Python project to read and write Snapgene *.dna into dict, json, and biopython object.
✏️ A versatile DNA sequence optimizer
a JavaScript DNA, RNA, and protein sequence viewer
Interactive graph visualizations with Python and HTML/CSS/JS.