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ANHIR submission #44

Merged
Borda merged 28 commits into from
Nov 19, 2019
Merged

ANHIR submission #44

Borda merged 28 commits into from
Nov 19, 2019

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@Borda
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@Borda Borda commented Nov 19, 2019 •
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Description

materials for ANHIR submission to TMI

Type of change

Please delete options that are not relevant.

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • This change requires a documentation update

Checklist:

  • My code follows the style guidelines of this project
  • I have performed a self-review of my own code
  • I have commented my code, particularly in hard-to-understand areas
  • I have made corresponding changes to the documentation
  • My changes generate no new warnings
  • I have added tests that prove my fix is effective or that my feature works
  • New and existing unit tests pass locally with my changes
  • Any dependent changes have been merged and published in downstream modules

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codecov bot commented Nov 19, 2019 •
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Codecov Report

Merging #44 into master will decrease coverage by <1%.
The diff coverage is 94%.

@@          Coverage Diff           @@
##           master    #44    +/-   ##
======================================
- Coverage      96%    96%   -<1%     
======================================
  Files          10     10            
  Lines        1586   1673    +87     
======================================
+ Hits         1517   1598    +81     
- Misses         69     75     +6

Borda added 28 commits November 19, 2019 17:00
@Borda
export figures
f27c211
@Borda
update eval. submission
fcebdee
@Borda
update Results ipynb
13f8e5d
@Borda
add codecov info
5715071
@Borda
fix cols swap in eval. submission
318cfbe
@Borda
update drawing (cmap)
cbb6598
@Borda
update Results ipynb
896267e
@Borda
add expt name
e6380d1
@Borda
update docs
e324c9f
@Borda
elastix params for ANHIR
feec851
@Borda
update elastix params
e9d6aa3
@Borda
update visual
3cfd56a
@Borda
revert Elastix config
6ae5f3d
@Borda
update CI
cdffc1b 
* update Travis dist
@Borda
update eval. & notebook
a0bdee8
@Borda
eval: filter lnds online
becefda 
* refactor splitext
* update compute stats
@Borda
update ipynb results
3f2808b
@Borda
update eval. filter
fe0d7f7
@Borda
update ipynb results
dde8af1
@Borda
update ipynb results
6614fad
@Borda
update ipynb drawing
e5cfeaf
@Borda
ext. evaluate tissue-state
12b08bc
@Borda
update ipynb results
a646908
@Borda
update ipynb results
e8f3c31
@Borda
fix pkg setup
b500e37
@Borda
fix docs: pandoc
932ee26
@Borda
fix pep8
015a130
@Borda
formatting
6c3fa62
@Borda Borda self-assigned this Nov 19, 2019
@Borda Borda merged commit 560728a into master Nov 19, 2019
@Borda Borda deleted the ANHIR branch November 19, 2019 20:20
Borda added a commit that referenced this pull request Nov 19, 2019
@Borda
ANHIR submission (#44)
ec2ca0d 
* add experiment name
* update eval. submission
* eval: jit filter landmarks
* update compute stats
* fix cols swap in eval. submission
* ext. evaluate tissue-state
* add codecov info
* update docs
* refactor splitext
* fix pkg setup
* update CI

* update Results ipynb
* exporting figures
* update drawing (cmap)
* elastix params for ANHIR
* update visual
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@Borda