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Starred repositories
Website for the Brain Imaging Data Structure standard.
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
PETPrep head motion correction workflow
PETPrep: A Robust Preprocessing Pipeline for PET Data
Fully automatic total body segmentation in 3D Slicer using "TotalSegmentator" AI model
Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space
Example download scripts for the OASIS3 project
Codes for paper Evaluation of plasma phospho-tau217 for Alzheimer’s disease using a fully automated platform – an international multi-center study in primary and secondary care , by Palmqvist, Warm…
Framework for the reproducible processing of neuroimaging data with deep learning methods
Transforms complex documents like PDFs into LLM-ready markdown/JSON for your Agentic workflows.
[Nature Medicine'25] A Multimodal Vision Foundation Model for Clinical Dermatology
Code from paper: Ventral attention network connectivity is linked to cortical maturation and cognitive ability in childhood
The repo contains processing codes to process ABCD minimally processed data
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
FMRI Interactive Navigation and Discovery (FIND) Visualization Tool 🔍
Analysis of the dependencies between global BOLD signals, EEG and peripheral physiology
Energy Landscape Analysis Toolbox (ELAT) for MATLAB
Association and causal mediation between Marital Status and Depression: A Large-scale, Two-stage, Cross-country Analysis
noxtoby / awkde
Forked from mennthor/awkdeAdaptive Width KDE with Gaussian Kernels
Multi-platform, free open source software for visualization and image computing.