🧬 Bioinformatician at PennMedicine
🔬 Specializing in genomic data analysis and pipeline development
💻 Passionate about automating bioinformatics workflows
🌐 Visit my website: chaserushton.com
🤝 Open to collaborating on bioinformatics and data science projects
📚 Continuously learning and exploring new technologies
🎯 Focus on clinical genomics and precision medicine

• Developing and maintaining bioinformatics pipelines
• Analyzing genomic data and variant calling
• Automating data processing workflows
• Creating tools for clinical genomics applications
• Implementing best practices in clinical sequencing analysis

• Genomic Data Lake - Advanced genomic data management system with interactive visualizations and multi-format support (TMB, CNV, VCF, MAF)
• GenomicTools - Comprehensive Python toolkit for genomic data analysis, including variant calling, annotation, and QC metrics
• ICA Tools - Comprehensive toolkit for automating Illumina Connected Analytics (ICA) workflows, designed for Penn Medicine's PCD
• SensSpec - Tool for calculating sensitivity and specificity metrics in variant calling
• Python_code - Collection of bioinformatics Python scripts
• RandomScripts - Various utility scripts for data analysis

• NGS Data Analysis
  • Whole Genome Sequencing
  • Exome Sequencing
  • RNA-Seq
  • ChIP-Seq
• Variant Analysis
  • SNV/Indel Calling
  • Structural Variant Detection
  • Copy Number Variation
• Pipeline Development
  • WDL Workflows
  • Snakemake Pipelines
  • Nextflow
• Clinical Applications
  • Diagnostic Sequencing
  • Precision Medicine
  • Quality Control

• Contribute to open-source bioinformatics tools
• Develop new clinical genomics pipelines
• Share more bioinformatics tutorials and documentation
• Expand cloud computing expertise
• Present at bioinformatics conferences
• Publish research papers in genomics
• Mentor aspiring bioinformaticians

• 💼 Connect with me on LinkedIn
• 🌐 Visit my website: chaserushton.com
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• 💬 Open an issue in any of my repositories