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snaptron Public
fast webservices based query tool for large sets of genomic features
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snaptron-experiments Public
contains code and scripts to re-create analysis function experiments from the Snaptron paper
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ld_preload_tutorial Public
Overview of how to use LD_PRELOAD using ZLIB wrapper for ZSTD compression
Roff UpdatedDec 28, 2023 -
open-data-registry Public
Forked from awslabs/open-data-registryA registry of publicly available datasets on AWS
Python Apache License 2.0 UpdatedJan 9, 2023 -
bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedJan 16, 2021 -
mosdepth Public
Forked from brentp/mosdepthfast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Nim MIT License UpdatedNov 2, 2020 -
gffcompare Public
Forked from gpertea/gffcompareclassify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
C++ MIT License UpdatedOct 26, 2020 -
monorail_unifier_galaxy Public
aggregator tool for multiple monorail pump outputs
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gclib Public
Forked from gpertea/gclibGCLib - Genomic C(++) library of reusable code for bioinformatics projects
C++ Other UpdatedAug 13, 2019 -
jhu-thesis-template Public
Forked from weitzner/jhu-thesis-templateJHU Thesis Template
TeX UpdatedJul 18, 2018 -
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zstd Public
Forked from facebook/zstdZstandard - Fast real-time compression algorithm
C Other UpdatedMar 13, 2018 -
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SnaptronUI Public
Forked from PhaniGaddipati/SnaptronUIA webapp frontend to query exon-exon junction data via Snaptron
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sliceit Public
python client for web services offering segmental access to genomics sequence/alignments.
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Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
C GNU General Public License v3.0 UpdatedMay 22, 2017 -
SciScript-Python Public
Forked from sciserver/SciScript-PythonPython libraries for SciScript, Jupyter Notebooks
Python Other UpdatedMay 21, 2017 -
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Rcorrector Public
Forked from mourisl/RcorrectorError correction for Illumina RNA-seq reads
C++ GNU General Public License v3.0 UpdatedMay 17, 2017 -
Lighter Public
Forked from mourisl/LighterFast and memory-efficient sequencing error corrector
C++ GNU General Public License v3.0 UpdatedMay 15, 2017 -
squeakr Public
Forked from splatlab/squeakrSqueakr: An Exact and Approximate k -mer Counting System
C BSD 3-Clause "New" or "Revised" License UpdatedMay 13, 2017 -
libbf Public
Forked from mavam/libbf🎯 Bloom filters for C++11
C++ BSD 3-Clause "New" or "Revised" License UpdatedMay 13, 2017 -
hisat Public
Forked from DaehwanKimLab/hisatFast spliced aligner with low memory requirements
C++ GNU General Public License v3.0 UpdatedJun 28, 2016 -
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