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  1. PPRreads_ASSEMBLY PPRreads_ASSEMBLY Public

    Wrapper of 2 rounds of BWAmem2 alignment and samtools consensus.

    Shell 1

  2. Courcelle_et_al2018_Echimyidae Courcelle_et_al2018_Echimyidae Public

    Repository for alignment datasets

  3. OR_Finder OR_Finder Public

    A snakemake-encapsulated bioinformatics pipeline that extracts olfactory receptor genes for mammalian genomes.

    Shell

  4. PPR_detection PPR_detection Public

    Pipeline developped for the Animal Production and Health section of the joint FAO-AIEA to align Peste des Petits Ruminants (PPR) reads. Also extracts the genomic region amplified by NP3 and NP4 PCR…

    Python