Fast, robust Google Flights scraper (API) for Python. (Probably)

Official implementation of "Paper2Rebuttal: A Multi-Agent Framework for Transparent Author Response Assistance"

GEne Cluster prediction with COnditional random fields.

Target / Integrative Genetic Element Retriever: precisely maps IGEs (a defined type of genomic island) in bacterial and archaeal genomes; package also includes orthogonal program Islander

Interactive tutorials for using scikit-bio in biological research

A set of ready to use scientific skills for Claude

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

Genome modeling and design across all domains of life

More scalable dereplication for metagenome assembled genomes

BertViz: Visualize Attention in Transformer Models

snakemake pipeline for creating trees from sequence sets

A tool for removing redundant genomes from a set of assemblies

A genome diagram generator for microbes and organelles

Fully Local Manus AI. No APIs, No $200 monthly bills. Enjoy an autonomous agent that thinks, browses the web, and code for the sole cost of electricity. 🔔 Official updates only via twitter @Martin9…

Inference of ploidy and heterozygosity structure using whole genome sequencing data

A fast whole-genome aligner based on de Bruijn graphs

Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.

PyAMPA: The new version of the AMPA software

The official codebase of peptidy, a peptide processing tool for machine learning.

Metagenomic classification of long-read sequencing data

A command line tool to identify and annotate small proteins in microbial sequencing datasets.

Antimicrobial Peptide Structural Evolution Miner (AMP-SEMiner), an integrated AI framework designed for the simultaneous identification of antimicrobial peptides (AMPs) as small open reading frames…

A deep learning based approach to predict Antibiotic Resistance Genes (ARGs) from metagenomes. It provides two models,deepARG-SS and deepARG-LS.

A tool for drawing ANI clustermap between all-vs-all microbial genomes

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

🧬 gget enables efficient querying of genomic reference databases