- The training dataset and three test datasets associated with the publication are available under the '00.dataset'
OR get it from Zenodo. - PRP model are available under the '02.code' folders, with names PRP_model.pkl.
- The PRP performance comparison associated with the publication is available under the '02.code' folders, with names 02.performance.ipynb.
- The PRP scores are available under the '03.PRP_score' folders.
- For user convenience, a web interface will be provided, offering access to the PRP scores, biological annotations for variants, and decision plots for prediction interpretation
| library | version | library | version | library | version | library | version |
|---|---|---|---|---|---|---|---|
| CatBoost | v1.2.5 | LightGBM | v4.1.0 | Optuna | v3.6.1 | scikit-learn | v1.2.2 |
| Shap | v0.45.0 | Tabnet | v4.1.0 | Torch | v2.3.0 | XGBoost | v2.0.3 |