Python API to compute RNA energetics and do structure prediction across multiple secondary structure packages.

See our full docs.

arnie is available on PyPI.

pip install arnie

src/arnie: source code for the arnie package.

docs: docsify-based markdown documentation for the arnie package.

tests: unit tests

notebooks: example jupyter notebooks with usage.

scripts: scripts for processing sequences in batch.

parameter_files: dir of various parameter files for packages, put here out of convenience.

(c) 2024 Leland Stanford Jr University Authors: Hannah Wayment-Steele