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Commits on Dec 23, 2025

• ran nf-test

  

  Ethan Hetrick

  committed
  b064fed

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• Fixed whitespaces

  

  Ethan Hetrick

  committed
  fe47276

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• Renamed test to be more descriptive

  

  Ethan Hetrick

  committed
  b60c343

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• reverted changes to prefixes to properly accommodate a multi-way comparison

  

  Ethan Hetrick

  committed
  bd45cca

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• Merge branch 'nf-core:master' into master

  Ethan-Hetrick

  authored
  e3fab37

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• Migrate samtools dict/faidx/merge to topics (#9598)

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  SPPearce

  authored
  9a48bce

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• Ngscheckmate topics (#9597)

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  SPPearce

  and

  LouisLeNezet

  authored
  bcf558d

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• Update GitHub PR template check list item - version numbers (#9586)

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  PeterKnealeCMRI

  and

  SPPearce

  authored
  fa6b527

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• Update MLST from 2.23 to 2.25 (#9604)

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  svermai

  and

  Subham Verma

  authored
  49bdeef

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Commits on Dec 22, 2025

• Update the FASTP output file names to match "R1/R2" naming conventions (#9606)

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  tgelafr-pfzr

  and

  Tatiana Gelaf Romer

  authored
  b8f1de0

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• Bump genmod to 3.10.2 and switch to topics (#9603)

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  fellen31

  authored
  3643455

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• Fix string path (#9602)

  Show description for e8db6ba
  

  LouisLeNezet

  and

  fellen31

  authored
  e8db6ba

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• Swap mpileup to topics (#9595)

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  SPPearce

  authored
  f0393b4

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• Swap bcftools/mpileup to topic (#9596)

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  SPPearce

  authored
  24ddb01

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• chore(deps): update conda-incubator/setup-miniconda digest to 8352349

  renovate[bot]

  authored
  0acf513

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Commits on Dec 19, 2025

• feat(ribowaltz): Export underlying data for all QC plots (#9594)

  Show description for b59f74e
  

  pinin4fjords

  and

  claude

  authored
  b59f74e

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• feat(ribowaltz): Export underlying data from QC plots (#9593)

  Show description for b7912f7
  

  pinin4fjords

  and

  claude

  authored
  b7912f7

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• Fix modkit pileup stub (#9590)

  fellen31

  authored
  e8557b9

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• Allow gzipped inputs to modkit/bedmethyltobigwig (#9591)

  Show description for e08d432
  

  fellen31

  and

  Felix-Kummer

  authored
  e08d432

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Commits on Dec 18, 2025

• Update modules/nf-core/fastani/main.nf

  Show description for cd935a6
  

  Ethan-Hetrick

  and

  vagkaratzas

  authored
  cd935a6

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• Update modules/nf-core/fastani/main.nf

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  Ethan-Hetrick

  and

  vagkaratzas

  authored
  b2f8b66

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• Update modules/nf-core/fastani/tests/main.nf.test

  Show description for 1b184c3
  

  Ethan-Hetrick

  and

  vagkaratzas

  authored
  1b184c3

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• Update modules/nf-core/fastani/meta.yml

  Show description for 03ceb91
  

  Ethan-Hetrick

  and

  vagkaratzas

  authored
  03ceb91

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• Update RSEQC modules with Seqera Wave containers matching environment.yml (#9588)

  Show description for 0145202
  

  pinin4fjords

  and

  claude

  authored
  0145202

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• Add fq2bam fq align dd bwamem (#9309)

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  6 peopleauthored
  e3d2496

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Commits on Dec 17, 2025

• fix: formatting

  

  Ethan Hetrick

  committed
  4162446

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• fix: attempt 3 at fixing whitespaces

  

  Ethan Hetrick

  committed
  49bbc99

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• fix: attempt 2 at fixing whitespaces

  

  Ethan Hetrick

  committed
  c0979e1

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• fix: added newline

  

  Ethan Hetrick

  committed
  b454c82

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• fix: corrected file formats

  

  Ethan Hetrick

  committed
  07024b8

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• fix: corrected meta.yml

  

  Ethan Hetrick

  committed
  ae6a3c1

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• Merge branch 'nf-core:master' into master

  Ethan-Hetrick

  authored
  7269f2e

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• chore: updated meta.yml

  

  Ethan Hetrick

  committed
  fd58eb3

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• refactor: modified input/output options for fastANI and added stub test

  

  Ethan Hetrick

  committed
  8d54dba

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• Update cmaple (#9580)

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  vagkaratzas

  authored
  4f9dbf7

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