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@ENCODE-DCC

ENCODE DCC

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  1. encoded encoded Public

    Metadata database for ENCODE project

    JavaScript 112 51

  2. snovault snovault Public

    The SnoVault general purpose hybrid object-relational database

    Python 16 8

  3. checkfiles checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    Python 2

  4. pyencoded-tools pyencoded-tools Public

    Jupyter Notebook 11 13

  5. WranglerScripts WranglerScripts Public

    Collection of scripts used by the wranglers to interact with the servers

    Python 5 4

Repositories

Showing 10 of 125 repositories
  • encode-data-usage-examples Public
    ENCODE-DCC/encode-data-usage-examples’s past year of commit activity
    Jupyter Notebook 10 MIT 9 0 1 Updated Sep 11, 2025
  • encoded Public

    Metadata database for ENCODE project

    ENCODE-DCC/encoded’s past year of commit activity
    JavaScript 112 MIT 51 4 54 Updated Sep 8, 2025
  • geo-submission Public
    ENCODE-DCC/geo-submission’s past year of commit activity
    Python 3 MIT 2 0 1 Updated Jun 26, 2025
  • cdk-kubernetes-cherry Public

    EKS CDK deployment and apps for cherry-lab account

    ENCODE-DCC/cdk-kubernetes-cherry’s past year of commit activity
    Python 0 0 0 0 Updated Jun 3, 2025
  • encValData Public
    ENCODE-DCC/encValData’s past year of commit activity
    AngelScript 5 MIT 7 0 0 Updated May 27, 2025
  • genomic-data-service Public

    Flask based web service providing genomic region search, based on regulomedb.org

    ENCODE-DCC/genomic-data-service’s past year of commit activity
    Python 5 MIT 2 1 1 Updated Feb 19, 2025
  • regulome-encoded Public

    Temp repo for regulome development

    ENCODE-DCC/regulome-encoded’s past year of commit activity
    JavaScript 1 MIT 4 2 16 Updated Nov 15, 2024
  • checkfiles Public

    Files are checked to see if the MD5 sum (both for gzipped and ungzipped) is identical to the submitted metadata, as well as run through the validateFiles program from jksrc.

    ENCODE-DCC/checkfiles’s past year of commit activity
    Python 2 MIT 0 0 1 Updated Oct 2, 2024
  • kentUtils Public

    UCSC command line bioinformatic utilities

    ENCODE-DCC/kentUtils’s past year of commit activity
    C 186 94 15 1 Updated Jul 30, 2024
  • atac-seq-pipeline Public

    ENCODE ATAC-seq pipeline

    ENCODE-DCC/atac-seq-pipeline’s past year of commit activity
    Python 433 MIT 172 91 2 Updated Jul 18, 2024
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