Central repository for biomolecular foundation models with shared trainers and pipeline components

A generalized computational framework for biomolecular modeling.

Diffusion models of protein structure; trigonometry and attention are all you need!

Biological foundation modeling from molecular to genome scale

DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models

User friendly and accurate binder design pipeline

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

Code for running RFdiffusion

AlphaFold-initiated replica exchange protein docking

A tool for domain based annotation with databases from the Conserved Domains Database

Software package to design bridge RNAs as described by Durrant & Perry et al.

Generating iToL annotations from Spreadsheet or CSV files

A simple proxy client

A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome

OmegaFold Release Code

Predict multiple protein conformations using sequence clustering and AlphaFold2.

Viral protein family functional prediction using protein language models

Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.