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segger_dev Public
a cutting-edge cell segmentation model specifically designed for single-molecule resolved spatial omics datasets. It addresses the challenge of accurately segmenting individual cells in complex ima…
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EMBO-multi-omics-course Public
Forked from velten-group/EMBO-multi-omics-courseJupyter Notebook UpdatedFeb 29, 2024 -
cell2module Public
Forked from vitkl/cell2modulecell2module: decomposing scRNA and scATAC cell identity into gene modules using count-based Bayesian NMF
Python Apache License 2.0 UpdatedAug 21, 2023 -
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spatialdata-notebooks Public
Forked from scverse/spatialdata-notebooksJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedMay 2, 2023 -
spatialdata-sandbox Public
Forked from giovp/spatialdata-sandboxPython GNU General Public License v3.0 UpdatedFeb 28, 2023 -
spatialdata Public
Forked from scverse/spatialdataModular storage and efficient manipulation of spatial multimodal molecular data in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedFeb 25, 2023 -
mcmicro Public
Forked from labsyspharm/mcmicroMultiple-choice microscopy pipeline
Nextflow MIT License UpdatedOct 20, 2022 -
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SpatialBenchmarking Public
Forked from QuKunLab/SpatialBenchmarkingJupyter Notebook BSD 2-Clause "Simplified" License UpdatedJun 10, 2022 -
squidpy Public
Forked from scverse/squidpySpatial Single Cell Analysis in Python
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 5, 2021 -
scarches Public
Forked from theislab/scarchesQuery to reference mapping for single-cell genomics
Jupyter Notebook UpdatedNov 30, 2021 -
scgen Public
Forked from theislab/scgenSingle cell perturbation prediction
Python GNU General Public License v3.0 UpdatedNov 4, 2021 -
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SpatialMouseAtlas2020 Public
Forked from MarioniLab/SpatialMouseAtlas2020Data processing and analysis scripts for our spatial profiling of embryos using seqFISH
R MIT License UpdatedMar 22, 2021 -
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material Public
Forked from JosefineRuder/materialMaterial for course STA426 at UZH, Fall Semester 2020
HTML MIT License UpdatedOct 2, 2020 -
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robinsonlabuzh.github.io Public
Forked from robinsonlabuzh/robinsonlabuzh.github.ioRobinson Lab website
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SeqLearn Public
Forked from EliHei/SeqLearnSeqLearner is a multitask learning module for semi-supervised learning on biological sequences.
Python MIT License UpdatedFeb 19, 2019
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