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FarukEfe/README.md

Hey there,

I have a deep passion in software for bioinformatics and computer vision. I'm currently a Computer Science CO-OP III student at McMaster. Here's some things about me:

🦠 iGEM 🦠 ... I've first participated in the International Genetically Engineered Machine (iGEM) competition in 2021 as a dry-lab researcher and web developer for team: Saint_Joseph. Currently, I'm working as a dry-lab modeling researcher and software developer at team: McMasterU. Some tasks include:

  • refining and improving the metabolic network model for two algae organisms which are Chlamydomonas reinhardtii and Chlorella sorokiniana (removing EGCS, Mass-balance, Genome Annotations)
  • running the flux-balance and variability analysis to determine potential autotrophic pathway modifications using NumPy, COBRApy
  • working on a full-stack software for small-scale laboratories to manage deadlines, projects, and inventory. Front-end: React + TypeScript + Next.js | Back-end: PostgreSQL (via Supabase)

🌱 I’m currently learning more about computer vision, deep neural networks, and natural language processing. Also participating in RoboMaster RMUL 2025 (check us out: MacFalcon)

🖥️ Languages 🖥️ ... Python | JavaScript | TypeScript | Swift | C/C++ | MATLAB | Java | Elm (Haskell but slower)

🌱 Future plans 🌱 ...

  • Learn Go | Rust | Solidity
  • Improve full-stack and ML portfolio (open to inquiries involving related project ideas)

Pinned Loading

  1. Yongsoo-Cho/LIMS-Demo Yongsoo-Cho/LIMS-Demo Public

    A customizable lab management system for iGEM teams built with Next.js and Supabase.

    TypeScript 1

  2. McMasterU-iGEM-2025-Modelling McMasterU-iGEM-2025-Modelling Public

    iGEM 2025. McMasterU. Flux-balance analysis

    Jupyter Notebook

  3. Brain-Tumor-Classification-CNN Brain-Tumor-Classification-CNN Public

    Convolutional network for image classification of brain tumors into categories: glioma, meningioma, no tumor, pituitary. Built using Tensorflow. If you want to observe the Kaggle notebook, use the …

    Jupyter Notebook

  4. ICS4U-Culminating ICS4U-Culminating Public

    Forked from lcs-eyencilek/ICS4U-Culminating

    AP Computer Science Culminating Project (2022). Decision-based story game created with XCode, SwiftUI. Incorporates MVC pattern and practices JSON parsing & two client endpoints (CLI and IOS).

    Swift

  5. Calculus-in-C Calculus-in-C Public

    Algorithm for evaluating string mathematical expressions, and few Calculus operations in C.

    C

  6. pathfinder-system-london-2XC3 pathfinder-system-london-2XC3 Public

    A pathfinder software made for UK, London subway system using various algorithms. Made for COMPSCI 2XC3 group project.

    Python