MTS (Mitochondrial Targeting Sequence) prediction

After cloning this repo you want to run

source ./init.sh

The process of generating the graphs has been broken down into a sequence of actions.

The initial action fetch_fasta_data_from_uniprot assumes that you have some initial input data. Currently this data is hardcoded in the file protein_ids.csv.

An action directory normally contains a run.sh script that guides you through that step. There will also be a README.md file that will provide you with more information.

The three main steps required to generate the data required for creating the visualizations are the following.

1. fetch_fasta_data_from_uniprot
2. upload_fasta_files
3. build_gene_predictions

every new step builds upon the data returned by the previous ones.

Once the prediction files have been created it is possible to start with the visualizations and analysis.