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deconv Public
Forked from lutrarutra/deconvBulk RNA-seq Cell Type Proportion Deconvolution
Python MIT License UpdatedJun 23, 2025 -
fastp Public
Forked from OpenGene/fastpAn ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
C++ MIT License UpdatedFeb 12, 2024 -
mlflow Public
Forked from mlflow/mlflowOpen source platform for the machine learning lifecycle
Python Apache License 2.0 UpdatedAug 14, 2023 -
referenceR Public
Repository to store R commands that I like, things that I would like to remember
HTML UpdatedJan 15, 2023 -
alevin-fry Public
Forked from COMBINE-lab/alevin-fry🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Rust BSD 3-Clause "New" or "Revised" License UpdatedNov 30, 2022 -
projectR Public
Forked from genesofeve/projectRR GNU General Public License v2.0 UpdatedMay 28, 2022 -
ggplot2 Public
Forked from tidyverse/ggplot2An implementation of the Grammar of Graphics in R
R Other UpdatedMay 20, 2022 -
roxygen2 Public
Forked from r-lib/roxygen2Generate R package documentation from inline R comments
R Other UpdatedMay 14, 2022 -
salmon Public
Forked from COMBINE-lab/salmon🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
C++ GNU General Public License v3.0 UpdatedFeb 8, 2021 -
LoveIt Public
Forked from dillonzq/LoveIt❤️A clean, elegant but advanced blog theme for Hugo 一个简洁、优雅且高效的 Hugo 主题
JavaScript MIT License UpdatedOct 11, 2020 -
squid Public
Forked from Kingsford-Group/squidSQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
C++ BSD 3-Clause "New" or "Revised" License UpdatedAug 6, 2020 -
python-cheatsheet Public
Forked from labex-labs/python-cheatsheetBasic Cheat Sheet for Python (PDF, Markdown and Jupyter Notebook)
Jupyter Notebook MIT License UpdatedApr 26, 2020 -
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variantEffects Public
Generating automated summary of the effects of single nucleotide variants in EBV sequencing reads
Jupyter Notebook UpdatedNov 11, 2019 -
kallistobustools Public
Forked from pachterlab/kallistobustoolskallisto|bustools workflow for pre-processing single-cell RNA-seq data
Jupyter Notebook UpdatedNov 8, 2019 -
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svtools Public
Forked from hall-lab/svtoolsTools for processing and analyzing structural variants.
Python MIT License UpdatedOct 24, 2019 -
scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedJul 24, 2019 -
ExData_Plotting1 Public
Forked from rdpeng/ExData_Plotting1Plotting Assignment 1 for Exploratory Data Analysis
R UpdatedJul 19, 2019 -
referencePython Public
Noteworthy points that will help in understanding python
UpdatedJul 16, 2019 -
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appliedgenomics2019 Public
Forked from schatzlab/appliedgenomics2019Materials for Spring 2019 Applied Genomics Course
UpdatedFeb 24, 2019 -
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testRepo2 Public
Forked from CynthiaYuan-2023/testRepo2test repository for github pages
R UpdatedFeb 14, 2019 -
Visualization-Hackathon Public
Forked from idies/Visualization-HackathonVisualization Hackathon
HTML MIT License UpdatedJan 31, 2019 -
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