Stars
Official repository for the ProteinGym benchmarks
Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design
In silico directed evolution of peptide binders with AlphaFold
[ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space
Biological foundation modeling from molecular to genome scale
Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
Transformer Based Language Model for Peptide Property Prediction
TorchCFM: a Conditional Flow Matching library
🤖 Machine Learning Summer School Guide
Chat with your database or your datalake (SQL, CSV, parquet). PandasAI makes data analysis conversational using LLMs and RAG.
AlphaFold Meets Flow Matching for Generating Protein Ensembles
Structure-conditioned masked language modeling for protein sequence design
Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
A python module to plot secondary structure schemes
De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
Generation of protein sequences and evolutionary alignments via discrete diffusion models
Diffusion models of protein structure; trigonometry and attention are all you need!
Bio-Computing Platform Featuring Large-Scale Representation Learning and Multi-Task Deep Learning “螺旋桨”生物计算工具集
Protein-ligand structure prediction