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scMalignantFinder Public
scMalignantFinder is a Python package specially designed for analyzing cancer single-cell RNA-seq datasets to distinguish malignant cells from their normal counterparts.
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scRNA-seq_notes Public
Forked from mdozmorov/scRNA-seq_notesA list of scRNA-seq analysis tools
R MIT License UpdatedMay 29, 2025 -
awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
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Mitosis_code Public
Forked from QuKunLab/MitosisAvailable code for paper: "Yu, Qiaoni, et al. "Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution." Science Advances 9.4 (2023): eadd2175."
Jupyter Notebook UpdatedJun 5, 2024 -
APEC Public
Forked from QuKunLab/APECSingle cell epigenomic clustering based on accessibility pattern
Python BSD 2-Clause "Simplified" License UpdatedNov 9, 2022 -
ATAC-pipe Public
Forked from QuKunLab/ATAC-pipeAnalysis pipeline for ATAC-seq Data
Python UpdatedSep 2, 2021 -
MiScan Public
Forked from QuKunLab/MiScanBreast cancer prediction using deep learning
Python Apache License 2.0 UpdatedAug 29, 2020
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