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Galaxy-ML Public
Forked from goeckslab/Galaxy-MLMake machine learning simpler with Galaxy
HTML MIT License UpdatedJul 9, 2020 -
AllEnricher Public
Forked from zd105/AllEnricherA comprehensive gene set function enrichment tool for multiple species.
Shell MIT License UpdatedMar 23, 2020 -
scRNAseq-analysis-notes Public
Forked from crazyhottommy/scRNAseq-analysis-notesscRNAseq analysis notes from Ming Tang
MIT License UpdatedMar 18, 2020 -
R-graph-gallery Public
Forked from holtzy/R-graph-galleryA website that displays hundreds of R charts
HTML MIT License UpdatedFeb 21, 2020 -
PEGASAS Public
Forked from Xinglab/PEGASASPathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
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r Public template
Forked from binder-examples/rUsing R with Jupyter / RStudio on Binder
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedJan 30, 2020 -
DEcode Public
Forked from stasaki/DEcodeA prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
Jupyter Notebook Other UpdatedJan 11, 2020 -
netGO Public
Forked from unistbig/netGOR/Shiny package for network-integrated pathway enrichment analysis
CSS MIT License UpdatedJan 7, 2020 -
Myc-regulated_AS_PrCa_paper Public
Forked from Xinglab/Myc-regulated_AS_PrCa_paperScripts for plotting figures and running analysis throughout the manuscript
R UpdatedDec 1, 2019 -
gmqn Public
Forked from MengweiLi-project/gmqnGaussian Mixture Quantile Normalization (GMQN)
R UpdatedNov 4, 2019 -
ChIP-seq-analysis Public
Forked from crazyhottommy/ChIP-seq-analysisChIP-seq analysis notes from Ming Tang
Python MIT License UpdatedOct 30, 2019 -
MAESTRO Public
Forked from liulab-dfci/MAESTROSingle-cell Transcriptome and Regulome Analysis Pipeline
C GNU General Public License v3.0 UpdatedOct 29, 2019 -
simplystats Public
Forked from rbind/simplystatsSimply Statistics
HTML MIT License UpdatedOct 24, 2019 -
RNA-seq-analysis Public
Forked from crazyhottommy/RNA-seq-analysisRNAseq analysis notes from Ming Tang
Python MIT License UpdatedOct 22, 2019 -
NetBID Public
Forked from jyyulab/NetBIDData-driven Network-based Bayesian Inference of Drivers
R Apache License 2.0 UpdatedOct 9, 2019 -
RCy3 Public
Forked from cytoscape/RCy3New version of RCy3, redesigned and collaboratively maintained by Cytoscape developer community
R MIT License UpdatedOct 4, 2019 -
cytoscape-automation Public
Forked from cytoscape/cytoscape-automationCollection of scripts that include programmatic io and control of Cytoscape
HTML Creative Commons Zero v1.0 Universal UpdatedSep 21, 2019 -
Training-modules Public
Forked from hbctraining/Training-modulesMaterials for short, half-day workshops
HTML UpdatedSep 20, 2019 -
cytoscape Public
Forked from cytoscape/cytoscapeCytoscape: an open source platform for network analysis and visualization
Shell UpdatedSep 4, 2019 -
AutoAnnotateApp Public
Forked from BaderLab/AutoAnnotateAppAutoAnnotate Cytoscape App
Java GNU Lesser General Public License v2.1 UpdatedAug 19, 2019 -
cytoscape-tutorials Public
Forked from cytoscape/cytoscape-tutorialsCollection of modular Cytoscape tutorials for online presentation using reveal.js
HTML Creative Commons Zero v1.0 Universal UpdatedJul 31, 2019 -
EPIC Public
Forked from BaderLab/EPICThis is the public repository for the EPIC tool.
Python UpdatedJul 15, 2019 -
EnrichmentMapApp Public
Forked from BaderLab/EnrichmentMapAppEnrichment Map Cytoscape App
Java UpdatedJul 8, 2019 -
cgdsr Public
Forked from cBioPortal/cgdsrR-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
R GNU Lesser General Public License v3.0 UpdatedJun 25, 2019 -
pathfindR Public
Forked from egeulgen/pathfindRPathway Enrichment Analysis Utilizing Active Subnetworks
R Other UpdatedJun 25, 2019 -
aml_classifer Public
Forked from schultzelab/aml_classiferCode and figures of the manuscript by Warnat-Herresthal et al 2019
HTML UpdatedJun 12, 2019 -
hiview Public
Forked from idekerlab/hiviewHiView: the universal viewer for hierarchical data
JavaScript MIT License UpdatedJun 11, 2019 -
fgsea Public
Forked from alserglab/fgseaFast Gene Set Enrichment Analysis
R Other UpdatedJun 7, 2019 -
GSEA-InContext_Explorer Public
Forked from CostelloLab/GSEA-InContext_ExplorerShiny app for gene set enrichment analysis using GSEA-InContext
CSS UpdatedJun 4, 2019 -
biojupies Public
Forked from MaayanLab/biojupiesAutomated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
HTML Apache License 2.0 UpdatedMay 31, 2019
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