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1. Scott-Lab-QBI/zf_tracking_networks Scott-Lab-QBI/zf_tracking_networks Public

   DeepLabCut and SLEAP pre-trained pose estimation networks for zebrafish larvae

   Jupyter Notebook 2

2. gxl2swc gxl2swc Public

   repository that shows the learning curve and the final result of a python script that reads a gxl file and converts into .swc format

   Python

3. Hypha_WMTS Hypha_WMTS Public

   Implementations of the hyphal growth model of Balmant et al., PLoS One, 10(3), 2015.

   MATLAB 1

4. swc_node_sorter swc_node_sorter Public

   gets .swc files and sort its node list correctly in order to be accepted by DiademMetric.jar for score calculation

   Python

5. swc_metrics swc_metrics Public

   set of filament tracing metric computation utilities (for .swc files)

   Python 1

6. AerialHyphae_DLB AerialHyphae_DLB Public

   Python implementation of the mycelial growth model for Aerial hyphae from Coradin et al., Biochem. Eng. J. 54(3) 2011.