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pdbe-api-training
pdbe-api-training PublicInteractive Python notebooks for PDBe API training
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protein-cluster-conformers
protein-cluster-conformers PublicClusters protein chains based on CA distance difference
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- pdbe-notebooks Public
PDBeurope/pdbe-notebooks’s past year of commit activity - PDBe-MCP-Servers Public
PDBe MCP Servers integrate Protein Data Bank Europe resources with LLMs via Model Context Protocol. Provides seamless access to protein structure data through API tools and graph database schema assistance for intelligent Cypher query generation, bridging structural biology and AI research.
PDBeurope/PDBe-MCP-Servers’s past year of commit activity - ccdutils Public
A set of python tools to deal with PDB chemical components definitions for small molecules, taken from the wwPDB Chemical Component Dictionary, uses RDKit
PDBeurope/ccdutils’s past year of commit activity - pdb-rna-viewer Public
The PDB RNA viewer depicts the secondary structure of a RNA in a 2D representation
PDBeurope/pdb-rna-viewer’s past year of commit activity - IUCr-annotation-pipeline Public
A Python-based pipeline to wrap around a transformer model to annotated IUCr-style JATS XML for functional protein residues
PDBeurope/IUCr-annotation-pipeline’s past year of commit activity
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