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A DSL for data-driven computational pipelines

Groovy 3,195 738 Updated Oct 25, 2025

This is a genetic analysis pipeline written in nextflow, to be eventually used in rare disease diagnosis.

Nextflow 1 Updated Jun 18, 2024

Structural variant toolkit for VCFs

Python 384 55 Updated Oct 11, 2025

Tandem repeat genotyping and visualization from PacBio HiFi data

Rust 127 12 Updated Jul 29, 2025

OpenFlexTyper

C++ 1 Updated Feb 20, 2020

A suite of tools for detecting expansions of short tandem repeats

C++ 83 27 Updated Jul 6, 2023

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python 3,536 763 Updated Oct 21, 2025

UBC R Study Group

HTML 25 13 Updated Apr 22, 2022

Public files and discussions about hackseq 2017

3 Updated Nov 21, 2017

RTG Tools: Utilities for accurate VCF comparison and manipulation

Java 326 52 Updated May 27, 2025

Documentation for the ANNOVAR software

245 417 Updated Jul 30, 2025

Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

HTML 205 47 Updated Mar 19, 2021

Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as the…

HTML 26 5 Updated Nov 14, 2022

Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

Python 23 5 Updated Apr 11, 2019

web-based analysis tool for rare disease genomics

Python 195 89 Updated Oct 26, 2025

Inferring sex chromosome and autosomal ploidy in NGS data

Python 2 1 Updated Oct 17, 2016