The cytoverse is a set of packages that are commonly used for cytometry data analysis. The cytoverse package is designed to make it easy to install and load core packages from the cytoverse in a single command. It also provides helper commands to check the versions of installed cytoverse packages.
# Install the cytoverse package
devtools::install_github("RGLab/cytoverse")
# Load the package
library(cytoverse)
# Install all cytoverse packages and their dependencies
cytoverse_update()library(cytoverse) will load the core cytoverse packages (once they
are installed):
- flowWorkspace, for gated data interaction.
- ggcyto, for data visualisation.
- openCyto, for auto gating.
- CytoML, for data analysis import/export through gatingML/xml.
library(cytoverse)
#> ── Attaching packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── cytoverse 0.0.0.9000 ──
#> ✓ flowCore 2.1.0 ✓ openCyto 2.1.0
#> ✓ flowWorkspace 4.1.4 ✓ CytoML 2.1.6
#> ✓ ggcyto 1.17.0