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TAndrighetti/README.md

Hi, I'm Tahila Andrighetti 👋

Bioinformatician / computational biologist focused on single-cell transcriptomics and systems/network biology, with a strong interest in reproducible pipelines and clean, well-documented analyses.

📄 Download my full CV (PDF)

About me

  • Bioinformatician working primarily in Linux environments, with Python as the main programming language, complemented by Bash and working knowledge of R for integrative analyses.
  • Expertise in end-to-end scRNA-seq analysis workflows, from raw sequencing files (FASTQ/BAM) through QC, normalization, integration, clustering, annotation, and functional interpretation.
  • Specialized in systems biology and network-based analyses, leveraging signaling and regulatory networks to address biological questions beyond gene lists.
  • Research focus on host–microbiome interactions, immunology, and inflammation, including IBD, immune cell biology, microbial virulence factors, and gene regulation in health and disease, often integrating multi-omics data.
  • Committed to reproducible science and data rigor, with experience in pipeline development, workflow standardization, and meticulous validation of identifiers, annotations, and results.

Starred Projects

Code Repositories (GitHub)

Project Descriptions & Case Studies (Portfolio)


Contact

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  1. HMIpipeline HMIpipeline Public

    Forked from korcsmarosgroup/HMIpipeline

    Python 2

  2. crodentium-rnaseq-networks crodentium-rnaseq-networks Public

    Systems biology analysis of Citrobacter rodentium integrating RNA-seq, virulence factors, metabolic pathways, and protein–protein interaction networks.

    Jupyter Notebook 1

  3. scRNA-seq-workflows scRNA-seq-workflows Public

    Reproducible scRNA-seq pipelines with documented configs, environments, and best practices.

    Jupyter Notebook 1

  4. path-gene-correlations path-gene-correlations Public

    Correlation analysis between gene expression and biological pathways using GSVA on GEO microarray data, available as both notebooks and reproducible command-line scripts.

    Jupyter Notebook 1