USEPA · cristinamullin · Nov 15, 2025 · Nov 14, 2025 · Nov 14, 2025 · Nov 14, 2025
diff --git a/.github/workflows/format-check.yaml b/.github/workflows/format-check.yaml
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -78,7 +78,6 @@ Imports:
     DT,
     dataRetrieval (>= 2.7.21),
     dbscan,
-    janitor,
     rExpertQuery,
     readr (>= 1.4.0),
     spsUtil,

diff --git a/R/TADARefTables.R b/R/TADARefTables.R
@@ -109,8 +109,7 @@ TADA_GetSynonymRef <- function(.data) {
 #' Nutrient Summation Reference Key
 #'
 #' This internal reference file includes USGS only units/speciations. It was
-#' created in July 2023 using the pcodes domain table from NWIS
-#' (https://help.waterdata.usgs.gov/codes-and-parameters/parameters). All USGS units
+#' created in July 2023 using the pcodes domain table from NWIS. All USGS units
 #' and speciations are given a target unit and speciation that is synonymous, but
 #' adheres to the WQX schema (WQX measure unit domain table).
 #'

diff --git a/R/Utilities.R b/R/Utilities.R
@@ -152,7 +152,8 @@ utils::globalVariables(c(
   "MagnitudeUnit", "MagnitudeValueLower", "MagnitudeValueUpper",
   "n_Aggregatedsamples", "n_exceedance", "SaltFresh", "TADA.ParameterInSite.Flag",
   "UniqueSpatialCriteria", "ATTAINS.WaterType.y", "DepthCategory", "User.WaterType",
-  "ATTAINS.OrganizationId", "MatchMessage", "Mismatch", "Ref.WaterType"
+  "ATTAINS.OrganizationId", "MatchMessage", "Mismatch", "Ref.WaterType",
+  "Characteristic", "WQXcharValRef"
 ))
 
 # global variables for tribal feature layers used in TADA_OverviewMap in Utilities.R

diff --git a/R/ContinuousDataFunctions.R → R/dev/Draft/ContinuousDataFunctions.R b/R/ContinuousDataFunctions.R → R/dev/Draft/ContinuousDataFunctions.R
diff --git a/...s/testthat/test-ContinuousDataFunctions.R → R/dev/Draft/test-ContinuousDataFunctions.R b/...s/testthat/test-ContinuousDataFunctions.R → R/dev/Draft/test-ContinuousDataFunctions.R
diff --git a/R/dev/requiredMaintenance.R b/R/dev/requiredMaintenance.R
@@ -10,8 +10,8 @@ spelling::spell_check_package(
   pkg = ".",
   vignettes = TRUE
 )
-# run to update spelling word list
 spelling::get_wordlist()
+# # run to update spelling word list
 # spelling::update_wordlist() # do not run until after checking wordlist & fixing spelling issues!
 
 ###########################################################

diff --git a/data/Data_6Tribes_5y.rda b/data/Data_6Tribes_5y.rda
diff --git a/data/Data_6Tribes_5y_Harmonized.rda b/data/Data_6Tribes_5y_Harmonized.rda
diff --git a/data/Data_HUC8_02070004_Mod1Output.rda b/data/Data_HUC8_02070004_Mod1Output.rda
diff --git a/data/Data_MT_MissoulaCounty.rda b/data/Data_MT_MissoulaCounty.rda
diff --git a/data/Data_Nutrients_UT.rda b/data/Data_Nutrients_UT.rda
diff --git a/data/Data_R5_TADAPackageDemo.rda b/data/Data_R5_TADAPackageDemo.rda
diff --git a/inst/extdata/AKAllotments.dbf b/inst/extdata/AKAllotments.dbf
diff --git a/inst/extdata/AKVillages.dbf b/inst/extdata/AKVillages.dbf
diff --git a/inst/extdata/ATTAINSParamUseEntityRef.csv b/inst/extdata/ATTAINSParamUseEntityRef.csv
diff --git a/inst/extdata/AmericanIndian.dbf b/inst/extdata/AmericanIndian.dbf
diff --git a/inst/extdata/OKTribe.dbf b/inst/extdata/OKTribe.dbf
diff --git a/inst/extdata/OffReservation.dbf b/inst/extdata/OffReservation.dbf
diff --git a/inst/extdata/VATribe.dbf b/inst/extdata/VATribe.dbf
diff --git a/inst/extdata/WQXCharacteristicRef.csv b/inst/extdata/WQXCharacteristicRef.csv
@@ -522,27 +522,26 @@
 "(Z)-Octadec-9-enyl (5-(((2-(((perfluorooctyl)sulphonyl)methylamino)ethoxy)carbonyl)amino)-o-tolyl)carbamate","Accepted",""
 "(Z,Z)-11,13-Hexadecadienal","Accepted",""
 "({4-[(1,2,3,3,4,4,5,5,6,6,6-Undecafluorohex-1-en-1-yl)oxy]phenyl}methyl)phosphonic acid","Accepted",""
-"*****RETIRED*4-Nonylphenol dodecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol heptadecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol heptaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol hexadecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol hexaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol nonaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol octadecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol octaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol pentadecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol pentaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol tetradecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol tetraethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol tridecaethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol triethoxylates","Accepted",""
-"*****RETIRED*4-Nonylphenol undecaethoxylates","Accepted",""
-"*****RETIRED*4-Octylphenol monoethoxylates","Accepted",""
-"*****RETIRED*Cyanides","Accepted",""
-"*****RETIRED*Deiodo flubendiamide","Accepted",""
-"*****RETIRED*Diethylstilbesterol glucuronide","Accepted",""
-"*****RETIRED*Phyllodocida","Accepted",""
-"*****RETIRED*Phyllodocidae","Accepted",""
+"*****RETIRED*4-Nonylphenol dodecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol heptadecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol heptaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol hexadecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol hexaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol nonaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol octadecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol octaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol pentadecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol pentaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol tetradecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol tetraethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol tridecaethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol triethoxylates","Deprecated",""
+"*****RETIRED*4-Nonylphenol undecaethoxylates","Deprecated",""
+"*****RETIRED*4-Octylphenol monoethoxylates","Deprecated",""
+"*****RETIRED*Benzo[g,h,i]perylene","Deprecated",""
+"*****RETIRED*Deiodo flubendiamide","Deprecated",""
+"*****RETIRED*Diethylstilbesterol glucuronide","Deprecated",""
+"*****RETIRED*Lambda-Cyhalothrin","Deprecated",""
 ".alpha.,.alpha.-Dimethylphenethylamine","Accepted",""
 ".alpha.,2,6-Trichlorotoluene","Accepted",""
 ".alpha.-1,2,3,4,5,6-Hexachlorocyclohexane-D6 or alpha-HCH D6","Accepted",""
@@ -3023,8 +3022,6 @@
 "1-Octanesulfonamide, N-ethenyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-N-methyl-","Accepted",""
 "1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-***retired***use Sulfluramid","Deprecated","SULFLURAMID"
 "1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-, reaction products with succinic anhydride monopolyisobutylene derivs.","Accepted",""
-"1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-N-(2-hydroxyethyl)-***retired***use N-Ethyl-N-(2-hydroxyethyl)perfluorooctanesulfonamide
-","Deprecated","N-ETHYL-N-(2-HYDROXYETHYL)PERFLUOROOCTANESULFONAMIDE"
 "1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-N-(2-hydroxyethyl)-, reaction products with N-ethyl-1,1,2,2,3,3,4,4,4-nonafluoro-N-(2-hydroxyethyl)-1-butanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,7-pentadecafluoro-N","Accepted",""
 "1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-N-2-propen-1-yl-","Accepted",""
 "1-Octanesulfonamide, N-ethyl-1,1,2,2,3,3,4,4,5,5,6,6,7,7,8,8,8-heptadecafluoro-N-2-propynyl-","Accepted",""
@@ -7460,6 +7457,7 @@
 "3-Methyl-1-butanol","Accepted",""
 "3-Methyl-1-butene & Cyclopentene","Accepted",""
 "3-Methyl-1-indanone","Accepted",""
+"3-Methyl-1-pentene","Accepted",""
 "3-Methyl-2,3-dihydrofuran","Accepted",""
 "3-Methyl-2-(nonafluorobutyl)-1H-indole","Accepted",""
 "3-Methyl-2-pentanone","Accepted",""
@@ -8000,7 +7998,7 @@
 "4,6-Dinitro-o-cresol","Accepted",""
 "4,7-Dimethylindan","Accepted",""
 "4,7-Dimethylundecane","Accepted",""
-"4,7-Methanoisobenzofuran, 4,5,6,7,8,8-hexachloro-1,3,3a,4,7,7a-hexahydro-****retired***use Endosulfan ether","Deprecated",""
+"4,7-Methano-1H-indene, octahydro-, (3aR,4R,7S,7aS)-rel-","Accepted",""
 "4,7-Methanoisobenzofuran-1,3-dione, 3a,4,7,7a-tetrahydro-5-methyl-, reaction products with hexahydro-1,3-isobenzofurandi","Accepted",""
 "4,7-Methanoisobenzofuran-1,3-dione, 3a,4,7,7a-tetrahydro-5-methyl-, reaction products with hexahydro-1,3-isobenzofurandione and 2,2,3,3-tetrafluoro-1-propanol","Accepted",""
 "4,7-Methanoisobenzofuran-1,3-dione, hexahydro-, 5-[(.gamma.-.omega.-perfluoro-C8-20-alkyl)thio] derivs.","Accepted",""
@@ -8737,6 +8735,7 @@
 "5-Methylhexan-3-one","Accepted",""
 "5-Methylindan","Accepted",""
 "5-Methyltetrazole","Accepted",""
+"5-Nitro-1-pentene","Accepted",""
 "5-Nitro-o-anisidine","Accepted",""
 "5-Nitro-o-toluidine","Accepted",""
 "5-Nitroacenaphthene","Accepted",""
@@ -10643,8 +10642,8 @@
 "Benzo[e]pyrene","Accepted",""
 "Benzo[e]pyrene-d12","Accepted",""
 "Benzo[e]pyrene-d14","Accepted",""
+"Benzo[g,h,i]perylene","Accepted",""
 "Benzo[ghi]fluoranthene","Accepted",""
-"Benzo[ghi]perylene","Accepted",""
 "Benzo[j]fluoranthene","Accepted",""
 "Benzo[k]fluoranthene","Accepted",""
 "Benzobicyclon","Accepted",""
@@ -11306,6 +11305,7 @@
 "C16 Hydrocarbons","Accepted",""
 "C16-C21 Aliphatics","Accepted",""
 "C16-C21 Aromatics","Accepted",""
+"C16-C21 Hydrocarbons","Accepted",""
 "C16-C34 Hydrocarbons","Accepted",""
 "C18 Hydrocarbons","Accepted",""
 "C19-C36 Aliphatics","Accepted",""
@@ -11329,6 +11329,7 @@
 "C2-Phenanthrenes/anthracenes","Accepted",""
 "C20 Hydrocarbons","Accepted",""
 "C20-TAS","Accepted",""
+"C21-C32 Hydrocarbons","Accepted",""
 "C21-C34 Aliphatics","Accepted",""
 "C21-C34 Aromatics","Accepted",""
 "C21-TAS","Accepted",""
@@ -13004,6 +13005,8 @@
 "Diphenyl disulfide","Accepted",""
 "Diphenyl ether","Accepted",""
 "Diphenyl isophthalate","Accepted",""
+"Diphenyl o-isopropylphenylphenyl phosphate","Accepted",""
+"Diphenyl p-tert-butylphenyl phosphate","Accepted",""
 "Diphenyl phthalate","Accepted",""
 "Diphenyl(2,4,6-trimethylphenyl)sulfonium perfluoro-1-octanesulfonate","Accepted",""
 "Diphenyl[4-(tridecafluorohexyl)phenyl]phosphine","Accepted",""
@@ -15168,7 +15171,6 @@
 "Lake suitability for recreation (choice list)","Accepted",""
 "Lake surface condition (choice list)","Accepted",""
 "Lake water level (choice list)","Accepted",""
-"Lambda-Cyhalothrin","Accepted",""
 "Lamivudine","Accepted",""
 "Lamotrigine","Accepted",""
 "Lamotrigine N2-glucuronide","Accepted",""
@@ -20921,6 +20923,7 @@
 "Spiro[cyclopentane-1,2'-[1,5,6]triazabicyclo[3.1.0]hexane], 4',4',6'-tris(trifluoromethyl)-","Accepted",""
 "Spirodiclofen","Accepted",""
 "Spiromesifen","Accepted",""
+"Spiropentane","Accepted",""
 "Spirotetramat","Accepted",""
 "Spiroxamine","Accepted",""
 "Split Count","Accepted",""
@@ -21891,7 +21894,6 @@
 "Tribromomethane","Accepted",""
 "Tribromonitromethane","Accepted",""
 "Tribufos","Accepted",""
-"Tributlytin***retired***use Tributyltin","Deprecated","TRIBUTYLTIN"
 "Tributoxy(3,3,4,4,5,5,6,6,7,7,8,8,8-tridecafluorooctyl)silane","Accepted",""
 "Tributyl phosphate","Accepted",""
 "Tributyl(pentafluoroethyl)stannane","Accepted",""