Thanks to visit codestin.com
Credit goes to github.com

Skip to content

Maintenance branch #750

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
jbousquin wants to merge 39 commits into from
Closed

Maintenance branch #750

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
39 commits
Select commit Hold shift + click to select a range
e965d1f
Update reference files
github-actions[bot] Nov 29, 2025
c059e64
Update example data
github-actions[bot] Nov 29, 2025
5697bd0
Update reference files
github-actions[bot] Nov 30, 2025
fff9c34
Update example data
github-actions[bot] Nov 30, 2025
57213f1
Update reference files
github-actions[bot] Dec 1, 2025
84b0f42
Update example data
github-actions[bot] Dec 1, 2025
4caa725
Update reference files
github-actions[bot] Dec 2, 2025
baa840a
Update example data
github-actions[bot] Dec 2, 2025
e22cdaf
Update reference files
github-actions[bot] Dec 3, 2025
88388de
Update example data
github-actions[bot] Dec 3, 2025
cc2e382
Update reference files
github-actions[bot] Dec 4, 2025
dda4dd5
Update example data
github-actions[bot] Dec 4, 2025
60db967
Update reference files
github-actions[bot] Dec 5, 2025
fca066a
Update example data
github-actions[bot] Dec 5, 2025
d7faac4
Update reference files
github-actions[bot] Dec 6, 2025
d9eaead
Update example data
github-actions[bot] Dec 6, 2025
3d3aabb
Update reference files
github-actions[bot] Dec 7, 2025
694ade9
Update example data
github-actions[bot] Dec 7, 2025
a43c2f0
Update reference files
github-actions[bot] Dec 8, 2025
c91e22d
Update example data
github-actions[bot] Dec 8, 2025
b6b5471
Update reference files
github-actions[bot] Dec 9, 2025
bb60195
Update example data
github-actions[bot] Dec 9, 2025
d43e652
Update reference files
github-actions[bot] Dec 10, 2025
ff71ece
Update example data
github-actions[bot] Dec 10, 2025
813c1b1
Update reference files
github-actions[bot] Dec 11, 2025
4b83451
Update example data
github-actions[bot] Dec 11, 2025
5afafef
Update reference files
github-actions[bot] Dec 12, 2025
58223db
Update example data
github-actions[bot] Dec 12, 2025
fd955e2
Update reference files
github-actions[bot] Dec 13, 2025
e32c085
Update example data
github-actions[bot] Dec 13, 2025
ac68913
Update reference files
github-actions[bot] Dec 14, 2025
e9ceb4b
Update example data
github-actions[bot] Dec 14, 2025
a67845b
Update reference files
github-actions[bot] Dec 15, 2025
7a2f120
Update example data
github-actions[bot] Dec 15, 2025
75cc5e8
Update reference files
github-actions[bot] Dec 16, 2025
309ba7a
Update example data
github-actions[bot] Dec 16, 2025
46edf7d
Update reference files
github-actions[bot] Dec 17, 2025
3258b33
Update example data
github-actions[bot] Dec 17, 2025
e9361e2
Update reference files
github-actions[bot] Dec 18, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
Binary file modified data/Data_6Tribes_5y.rda
View file
Open in desktop
Binary file not shown.
Binary file modified data/Data_6Tribes_5y_Harmonized.rda
View file
Open in desktop
Binary file not shown.
Binary file modified data/Data_HUC8_02070004_Mod1Output.rda
View file
Open in desktop
Binary file not shown.
Binary file modified data/Data_MT_AUMLRef.rda
View file
Open in desktop
Binary file not shown.
Binary file added data/Data_MT_AU_UsesRef.rda
View file
Open in desktop
Binary file not shown.
Binary file added data/Data_MT_AU_UsesRef_Water.rda
View file
Open in desktop
Binary file not shown.
Binary file modified data/Data_Nutrients_UT.rda
View file
Open in desktop
Binary file not shown.
Binary file modified data/Data_R5_TADAPackageDemo.rda
View file
Open in desktop
Binary file not shown.
Binary file modified inst/extdata/AKAllotments.dbf
View file
Open in desktop
Binary file not shown.
Binary file modified inst/extdata/AKVillages.dbf
View file
Open in desktop
Binary file not shown.
34 changes: 17 additions & 17 deletions inst/extdata/ATTAINSParamToWQPCharRef.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -87,9 +87,9 @@
"EUROPIUM","EUROPIUM","STANDARDIZE NAME (Normalized)"
"EUROPIUM","EUROPIUM","WQX SYNONYM REGISTRY (validation)"
"HOLMIUM","HOLMIUM","ATTAINS.PARAMETER"
"HOLMIUM","HOLMIUM","STANDARDIZE NAME (Normalized)"
"HOLMIUM","HOLMIUM","SYSTEMATIC NAME"
"HOLMIUM","HOLMIUM","WQX SYNONYM REGISTRY (validation)"
"HOLMIUM","HOLMIUM","STANDARDIZE NAME (Normalized)"
"SIMETRYN","SIMETRYN","ATTAINS.PARAMETER"
"SIMETRYN","SIMETRYN","STANDARDIZE NAME (Normalized)"
"SIMETRYN","SIMETRYN","WQX SYNONYM REGISTRY (validation)"
Expand Down Expand Up @@ -172,8 +172,8 @@
"METHYL PARAOXON","METHYL PARAOXON","WQX SYNONYM REGISTRY (validation)"
"METHYL PARAOXON","METHYL PARAOXON","STANDARDIZE NAME (Normalized)"
"HEXAZINONE","HEXAZINONE","ATTAINS.PARAMETER"
"HEXAZINONE","HEXAZINONE","STANDARDIZE NAME (Normalized)"
"HEXAZINONE","HEXAZINONE","WQX SYNONYM REGISTRY (validation)"
"HEXAZINONE","HEXAZINONE","STANDARDIZE NAME (Normalized)"
"HEXAZINONE","HEXAZINONE","CST.POLLUTANT"
"HEXAZINONE","HEXAZINONE","CST.STD.POLLUTANT"
"GENERAL OBSERVATION (TEXT)","LACK OF A COLDWATER ASSEMBLAGE","ATTAINS.PARAMETER"
Expand Down Expand Up @@ -293,8 +293,8 @@
"NONYLPHENOL","NONYLPHENOL","WQX SYNONYM REGISTRY (validation)"
"BRANCHED P-NONYLPHENOL","NONYLPHENOL","CST.STD.POLLUTANT"
"BRANCHED P-NONYLPHENOL","NONYLPHENOL","CST.POLLUTANT"
"N-NITROSODIPHENYLAMINE","N-NITROSODIPHENYLAMINE IN FISH TISSUE","ATTAINS.PARAMETER"
"N-NITROSODIPHENYLAMINE","N-NITROSODIPHENYLAMINE IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSODIPHENYLAMINE","N-NITROSODIPHENYLAMINE IN FISH TISSUE","ATTAINS.PARAMETER"
"GENERAL OBSERVATION (TEXT)","UNKNOWN (BIOLOGICAL IMPACTS)","ATTAINS.PARAMETER"
"CARBON-13/CARBON-12 RATIO","CARBON-13/CARBON-12 RATIO","ATTAINS.PARAMETER"
"CARBON-13/CARBON-12 RATIO","CARBON-13/CARBON-12 RATIO","STANDARDIZE NAME (Normalized)"
Expand Down Expand Up @@ -694,8 +694,8 @@
"ANTIMONY","ANTIMONY","WQX SYNONYM REGISTRY (validation)"
"ANTIMONY","ANTIMONY","CST.STD.POLLUTANT"
"ANTIMONY","ANTIMONY","CST.POLLUTANT"
"HEPTACHLOR EPOXIDE","HEPTACHLOR EPOXIDE IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"HEPTACHLOR EPOXIDE","HEPTACHLOR EPOXIDE IN FISH TISSUE","ATTAINS.PARAMETER"
"HEPTACHLOR EPOXIDE","HEPTACHLOR EPOXIDE IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"FLUBENDIAMIDE","FLUBENDIAMIDE","ATTAINS.PARAMETER"
"FLUBENDIAMIDE","FLUBENDIAMIDE","WQX SYNONYM REGISTRY (validation)"
"FLUBENDIAMIDE","FLUBENDIAMIDE","SYSTEMATIC NAME"
Expand Down Expand Up @@ -808,8 +808,8 @@
"ZINC","ZINC, CHRONIC","ATTAINS.PARAMETER"
"FLOW","FLOW ALTERATION-CHANGES IN DEPTH AND FLOW VELOCITY","ATTAINS.PARAMETER"
"HEXACHLOROCYCLOHEXANE","HEXACHLOROCYCLOHEXANE","ATTAINS.PARAMETER"
"HEXACHLOROCYCLOHEXANE","HEXACHLOROCYCLOHEXANE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROCYCLOHEXANE","HEXACHLOROCYCLOHEXANE","WQX SYNONYM REGISTRY (validation)"
"HEXACHLOROCYCLOHEXANE","HEXACHLOROCYCLOHEXANE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROCYCLOHEXANE","HEXACHLOROCYCLOHEXANE","CST.POLLUTANT"
"VOLATILE ORGANIC COMPOUNDS","VOLATILE ORGANICS (VOCS)","ATTAINS.PARAMETER"
"VOLATILE ORGANIC COMPOUNDS","VOLATILE ORGANICS (VOCS)","WQX SYNONYM REGISTRY (validation)"
Expand Down Expand Up @@ -951,9 +951,9 @@
"PHOTOMIREX","PHOTOMIREX","WQX SYNONYM REGISTRY (validation)"
"PHOTOMIREX","PHOTOMIREX","STANDARDIZE NAME (Normalized)"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","ATTAINS.PARAMETER"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","SYSTEMATIC NAME"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","WQX SYNONYM REGISTRY (validation)"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","SYSTEMATIC NAME"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","CST.POLLUTANT"
"HEXACHLOROBENZENE","HEXACHLOROBENZENE","CST.STD.POLLUTANT"
"PENTHIOPYRAD","PENTHIOPYRAD","ATTAINS.PARAMETER"
Expand Down Expand Up @@ -996,12 +996,12 @@
"BENZENE, NONYL-","N-NONYLBENZENE","WQX SYNONYM REGISTRY (validation)"
"BENZENE, NONYL-","N-NONYLBENZENE","ATTAINS.PARAMETER"
"HEXANE","HEXANE","ATTAINS.PARAMETER"
"HEXANE","HEXANE","STANDARDIZE NAME (Normalized)"
"HEXANE","HEXANE","WQX SYNONYM REGISTRY (validation)"
"HEXANE","HEXANE","STANDARDIZE NAME (Normalized)"
"HEXANE","HEXANE","SYSTEMATIC NAME"
"N-NITROSOPIPERIDINE","N-NITROSOPIPERIDINE","ATTAINS.PARAMETER"
"N-NITROSOPIPERIDINE","N-NITROSOPIPERIDINE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSOPIPERIDINE","N-NITROSOPIPERIDINE","STANDARDIZE NAME (Normalized)"
"N-NITROSOPIPERIDINE","N-NITROSOPIPERIDINE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSOPIPERIDINE","N-NITROSOPIPERIDINE","SYSTEMATIC NAME"
"FENITROTHION","FENITROTHION","ATTAINS.PARAMETER"
"FENITROTHION","FENITROTHION","WQX SYNONYM REGISTRY (validation)"
Expand Down Expand Up @@ -1866,8 +1866,8 @@
"P,P'-DDE","DDE IN FISH TISSUE","ATTAINS.PARAMETER"
"GENERAL OBSERVATION (TEXT)","NON-NATIVE AQUATIC PLANTS","ATTAINS.PARAMETER"
"N-NITROSO-N-METHYLUREA","N-NITROSO-N-METHYLUREA","ATTAINS.PARAMETER"
"N-NITROSO-N-METHYLUREA","N-NITROSO-N-METHYLUREA","WQX SYNONYM REGISTRY (validation)"
"N-NITROSO-N-METHYLUREA","N-NITROSO-N-METHYLUREA","STANDARDIZE NAME (Normalized)"
"N-NITROSO-N-METHYLUREA","N-NITROSO-N-METHYLUREA","WQX SYNONYM REGISTRY (validation)"
"LINDANE","LINDANE IN SEDIMENT","ATTAINS.PARAMETER"
"HYDROCARBONS","HYDROCARBONS","ATTAINS.PARAMETER"
"HYDROCARBONS","HYDROCARBONS","WQX SYNONYM REGISTRY (validation)"
Expand Down Expand Up @@ -2045,8 +2045,8 @@
"BENZIDINE","BENZIDINE","CST.POLLUTANT"
"BENZIDINE","BENZIDINE","CST.STD.POLLUTANT"
"N-NITROSOMORPHOLINE","N-NITROSOMORPHOLINE","ATTAINS.PARAMETER"
"N-NITROSOMORPHOLINE","N-NITROSOMORPHOLINE","STANDARDIZE NAME (Normalized)"
"N-NITROSOMORPHOLINE","N-NITROSOMORPHOLINE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSOMORPHOLINE","N-NITROSOMORPHOLINE","STANDARDIZE NAME (Normalized)"
"N-NITROSOMORPHOLINE","N-NITROSOMORPHOLINE","SYSTEMATIC NAME"
"CARBON-14","CARBON-14","ATTAINS.PARAMETER"
"CARBON-14","CARBON-14","WQX SYNONYM REGISTRY (validation)"
Expand Down Expand Up @@ -2143,8 +2143,8 @@
"SIMAZINE","SIMAZINE","CST.POLLUTANT"
"SIMAZINE","SIMAZINE","CST.STD.POLLUTANT"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","ATTAINS.PARAMETER"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","WQX SYNONYM REGISTRY (validation)"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","CST.STD.POLLUTANT"
"HEXACHLOROCYCLOPENTADIENE","HEXACHLOROCYCLOPENTADIENE","CST.POLLUTANT"
"METHIDATHION","METHIDATHION","ATTAINS.PARAMETER"
Expand Down Expand Up @@ -2413,8 +2413,8 @@ NA,"PERFLUOROHEXANE SULFONIC ACID (PFHxS)",NA
"BROMOBENZENE","BROMOBENZENE","CST.POLLUTANT"
"TRICHLOROETHYLENE","TRICHLOROETHYLENE (TCE)","ATTAINS.PARAMETER"
"TRICHLOROETHYLENE","TRICHLOROETHYLENE (TCE)","WQX SYNONYM REGISTRY (validation)"
"N-NITROSODI-N-PROPYLAMINE","N-NITROSODIPROPYLAMINE","ATTAINS.PARAMETER"
"N-NITROSODI-N-PROPYLAMINE","N-NITROSODIPROPYLAMINE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSODI-N-PROPYLAMINE","N-NITROSODIPROPYLAMINE","ATTAINS.PARAMETER"
"TETRACHLOROETHYLENE","TETRACHLOROETHYLENE/PCE","WQX SYNONYM REGISTRY (validation)"
"TETRACHLOROETHYLENE","TETRACHLOROETHYLENE/PCE","ATTAINS.PARAMETER"
"BIS(2-CHLOROISOPROPYL) ETHER","BIS(2-CHLOROISOPROPYL) ETHER","ATTAINS.PARAMETER"
Expand Down Expand Up @@ -2534,8 +2534,8 @@ NA,"PERFLUOROHEXANE SULFONIC ACID (PFHxS)",NA
"ANTHRACENE","ANTHRACENE","CST.STD.POLLUTANT"
"ANTHRACENE","ANTHRACENE","CST.POLLUTANT"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","ATTAINS.PARAMETER"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","WQX SYNONYM REGISTRY (validation)"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","STANDARDIZE NAME (Normalized)"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","CST.POLLUTANT"
"HEXACHLOROBUTADIENE","HEXACHLOROBUTADIENE","CST.STD.POLLUTANT"
"AMINOMETHYLPHOSPHONIC ACID","AMINOMETHYLPHOSPHONIC ACID","ATTAINS.PARAMETER"
Expand All @@ -2557,16 +2557,16 @@ NA,"PERFLUOROHEXANE SULFONIC ACID (PFHxS)",NA
"CYCLOHEXANAMINE, N-ETHYL-1-PHENYL-","CYCLOHEXANAMINE, N-ETHYL-1-PHENYL-","STANDARDIZE NAME (Normalized)"
"PERFLUORONONANOIC ACID","PERFLUORONONANOIC ACID (PFNA) IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"PERFLUORONONANOIC ACID","PERFLUORONONANOIC ACID (PFNA) IN FISH TISSUE","ATTAINS.PARAMETER"
"HEXACHLOROETHANE","HEXACHLOROETHANE IN FISH TISSUE","ATTAINS.PARAMETER"
"HEXACHLOROETHANE","HEXACHLOROETHANE IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"HEXACHLOROETHANE","HEXACHLOROETHANE IN FISH TISSUE","ATTAINS.PARAMETER"
"METHYL HYDRAZINE","METHYL HYDRAZINE","ATTAINS.PARAMETER"
"METHYL HYDRAZINE","METHYL HYDRAZINE","STANDARDIZE NAME (Normalized)"
"METHYL HYDRAZINE","METHYL HYDRAZINE","WQX SYNONYM REGISTRY (validation)"
"METHYL HYDRAZINE","METHYL HYDRAZINE","SYSTEMATIC NAME"
"LEAD","LEAD, DISSOLVED - CHRONIC","ATTAINS.PARAMETER"
"HEXAMETHYLPHOSPHORAMIDE","HEXAMETHYLPHOSPHORAMIDE","ATTAINS.PARAMETER"
"HEXAMETHYLPHOSPHORAMIDE","HEXAMETHYLPHOSPHORAMIDE","WQX SYNONYM REGISTRY (validation)"
"HEXAMETHYLPHOSPHORAMIDE","HEXAMETHYLPHOSPHORAMIDE","STANDARDIZE NAME (Normalized)"
"HEXAMETHYLPHOSPHORAMIDE","HEXAMETHYLPHOSPHORAMIDE","WQX SYNONYM REGISTRY (validation)"
"FECAL COLIFORM","FECAL COLIFORM","ATTAINS.PARAMETER"
"FECAL COLIFORM","FECAL COLIFORM","WQX SYNONYM REGISTRY (validation)"
"FECAL COLIFORM","FECAL COLIFORM","SYSTEMATIC NAME"
Expand Down Expand Up @@ -3067,8 +3067,8 @@ NA,"PERFLUOROHEXANE SULFONIC ACID (PFHxS) IN FISH TISSUE",NA
"METHYL TERT-BUTYL ETHER","MTBE","WQX SYNONYM REGISTRY (validation)"
"BUTYL BENZYL PHTHALATE","BUTYL BENZYL PHTHALATE IN FISH TISSUE","ATTAINS.PARAMETER"
"GENERAL OBSERVATION (TEXT)","EUTROPHICATION, NUTRIENTS","ATTAINS.PARAMETER"
"POLYCYCLIC AROMATIC HYDROCARBONS","HIGH MOLECULAR WEIGHT POLYCYCLIC AROMATIC HYDROCARBONS (HMW PAHS)","WQX SYNONYM REGISTRY (validation)"
"POLYCYCLIC AROMATIC HYDROCARBONS","HIGH MOLECULAR WEIGHT POLYCYCLIC AROMATIC HYDROCARBONS (HMW PAHS)","ATTAINS.PARAMETER"
"POLYCYCLIC AROMATIC HYDROCARBONS","HIGH MOLECULAR WEIGHT POLYCYCLIC AROMATIC HYDROCARBONS (HMW PAHS)","WQX SYNONYM REGISTRY (validation)"
"NICKEL","NICKEL IN FISH TISSUE","WQX SYNONYM REGISTRY (validation)"
"NICKEL","NICKEL IN FISH TISSUE","ATTAINS.PARAMETER"
"THIOUREA","THIOUREA","ATTAINS.PARAMETER"
Expand Down Expand Up @@ -3180,8 +3180,8 @@ NA,"PERFLUOROHEXANE SULFONIC ACID (PFHxS) IN FISH TISSUE",NA
"NITRATE","NITROGEN, NITRATE","ATTAINS.PARAMETER"
"NITRATE","NITROGEN, NITRATE","WQX SYNONYM REGISTRY (validation)"
"N-NITROSO-N-ETHYLUREA","N-NITROSO-N-ETHYLUREA","ATTAINS.PARAMETER"
"N-NITROSO-N-ETHYLUREA","N-NITROSO-N-ETHYLUREA","STANDARDIZE NAME (Normalized)"
"N-NITROSO-N-ETHYLUREA","N-NITROSO-N-ETHYLUREA","WQX SYNONYM REGISTRY (validation)"
"N-NITROSO-N-ETHYLUREA","N-NITROSO-N-ETHYLUREA","STANDARDIZE NAME (Normalized)"
"CHROMIUM","CHROMIUM - ACUTE","WQX SYNONYM REGISTRY (validation)"
"CHROMIUM","CHROMIUM - ACUTE","ATTAINS.PARAMETER"
"4-AMINOBIPHENYL","4-AMINOBIPHENYL","ATTAINS.PARAMETER"
Expand Down
Loading