Made minor edits to correct grammar mistakes in WQPDataHarmonization vignette.

Added example to InvalidFraction function in ResultFlagsDependent.R

Vignettes proofreading kh

InvalidFraction example

Added examples to functions in ResultFlagsDependent, ResultFlagsIndependent, Transformations (except HarmonizeCensoredData and CensoredDataStats), and Filtering.

Updated QAPPapproved function to add warning for when clean & cleanNA are FALSE. Also updated examples for QAPPDocAvailable function to improve clarity.

Added comments to examples for functions: ResultFlagsDependent.R, ResultFlagsIndependent.R, Transformations.R (except HarmonizeCensoredData and CensoredDataStats), and Filtering.R.

Added more co-author information. Changed "assessment" to "analysis" in TADA

Added examples to completed functions

small changes

Added an "errorsonly" parameter to InvalidFraction() which filters data to show only the invalid characteristic-fraction combinations when errorsonly = TRUE.

using devtools to update internal package documentation

Updated functions in ResultFlagsDependent.R and ResultFlagsIndependent.R to include option to review only flagged data via "errorsonly" parameter. (Note: haven't finished updating ResultFlagsIndependent.R functions)

row 439 of ResultFlagsIndependent.R was missing a = sign

fixes warning related to

example of HarmonizeData() function didn't have a "ref" input; however, the documentation states this would be an optional argument - function may need to be updated so that checkType(ref, "data.frame") only happens if a reference table is provided

Update ResultFlagsDependent.R

Added lat and long conversion to class numeric to autoclean

Changed clean_outsideUSA argument in InvalidCoordinates() to accept three options: "no" (default), "remove", or "change sign" to address issue #177

…ates

updated fips code reference file to include territories: https://www2.census.gov/geo/docs/reference/state.txt

updated vignette and test associated with clean_outsideUSA/Invalidcoordinates update

Added descriptions of errorsonly to all flag functions and added description of clean_outsideUSA inputs.