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Updated flag functions so that when errorsonly = TRUE and there are no flagged rows in the dataframe, the result is an empty dataframe.

Updating flag functions so that when errorsonly = TRUE and there are no errors, the functions return an empty dataframe.
Continued revising flag functions so that errorsonly would result in an empty dataframe if there are no flags
Added more options for clean argument in Invalid Speciation function - instead of clean = TRUE/FALSE, clean = c("invalid_only", "nonstandardized_only", "both", "none") which gives the user more flexibility to decide which rows to remove/retain.
@katiehealy
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@cristinamullin - I added options to the clean argument for the InvalidSpeciation function, but once again am running into the checkType issue (same as what happened with the InvalidCoordinates function). What was it that you did to resolve that issue?

@cristinamullin cristinamullin merged commit f475460 into develop Feb 10, 2023
@cristinamullin cristinamullin deleted the update-flag-functions-kh branch February 10, 2023 20:08
@cristinamullin cristinamullin restored the update-flag-functions-kh branch February 10, 2023 20:20
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3 participants