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46 add new projection values to chemical details resource endpoints #47

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Merged
merged 2 commits into from
Apr 8, 2025
Merged

46 add new projection values to chemical details resource endpoints #47

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1119a38
Added new projection value.
rachmaninoffpk Feb 10, 2025
f469b40
Added new projection value.
rachmaninoffpk Feb 10, 2025
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5 changes: 3 additions & 2 deletions R/chemical-APIs-batch.R
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Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@
#' @param Projection The format and chemical detail data returned. Allowed
#' values are 'chemicaldetailall', 'chemicaldetailstandard',
#' chemicalidentifier', 'chemicalstructure', 'ntatoolkit',
#' ccdchemicaldetails'. If left empty or there is a
#' ccdchemicaldetails', 'compact'. If left empty or there is a
#' mismatch, the default format will be 'chemicaldetailstandard'.
#' @param API_key The user-specific API key
#' @param rate_limit Number of seconds to wait between each request
Expand Down Expand Up @@ -137,7 +137,8 @@ get_chemical_details_batch_2 <- function(DTXSID = NULL,
'chemicalidentifier',
'chemicalstructure',
'ntatoolkit',
'ccdchemicaldetails')
'ccdchemicaldetails',
'compact')
index <- 2
if (!is.character(Projection)){
warning('Setting `Projection` to `chemicaldetailstandard`')
Expand Down
13 changes: 9 additions & 4 deletions R/chemical-APIs.R
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Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@
#' @param Projection The format and chemical detail data returned. Allowed
#' values are 'chemicaldetailall', 'chemicaldetailstandard',
#' 'chemicalidentifier', 'chemicalstructure', 'ntatoolkit',
#' 'ccdchemicaldetails'. If left empty or there is a mismatch, the default
#' 'ccdchemicaldetails', 'compact'. If left empty or there is a mismatch, the default
#' format will be 'chemicaldetailstandard'.
#' @param API_key The user-specific API key
#' @param Server The root address for the API endpoint
Expand Down Expand Up @@ -40,7 +40,8 @@ get_chemical_details <- function(DTXSID = NULL,
'chemicalidentifier',
'chemicalstructure',
'ntatoolkit',
'ccdchemicaldetails')
'ccdchemicaldetails',
'compact')
index <- 2
if (!is.character(Projection)){
warning('Setting `Projection` to `chemicaldetailstandard`')
Expand Down Expand Up @@ -115,7 +116,7 @@ get_chemical_details <- function(DTXSID = NULL,


create_data.table_chemical_details <- function(index = -1){
if (index %in% 2:6 ){
if (index %in% 2:7 ){
if (index == 2){
data <- data.table::data.table(id = character(),
cpdataCount = integer(),
Expand Down Expand Up @@ -191,7 +192,7 @@ create_data.table_chemical_details <- function(index = -1){
expocatMedianPrediction = character(),
expocat = character(),
nhanes = character())
} else {
} else if (index == 6) {
data <- data.table::data.table(id = character(),
dtxsid = character(),
dtxcid = character(),
Expand Down Expand Up @@ -229,6 +230,10 @@ create_data.table_chemical_details <- function(index = -1){
inchikey = character(),
wikipediaArticle = character(),
cpdataCount = integer())
} else {
data <- data.table::data.table(dtxsid = character(),
casrn = character(),
preferredName = character())
}
return(data)
}
Expand Down
2 changes: 1 addition & 1 deletion man/get_chemical_details.Rd
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2 changes: 1 addition & 1 deletion man/get_chemical_details_batch.Rd
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